A novel endothelial-related prognostic index by integrating single-cell and bulk RNA sequencing data for patients with kidney renal clear cell carcinoma
DX Li, QX Yu, CX Zeng, LX Ye, YQ Guo, JF Liu… - Frontiers in …, 2023 - frontiersin.org
Background: Endothelial cells in the tumor microenvironment play an important role in the
development of kidney renal clear cell carcinoma (KIRC). We wanted to further identify the …
development of kidney renal clear cell carcinoma (KIRC). We wanted to further identify the …
Protein disulfide-isomerase A3 is a robust prognostic biomarker for cancers and predicts the immunotherapy response effectively
Z Tu, Q Ouyang, X Long, L Wu, J Li, X Zhu… - Frontiers in …, 2022 - frontiersin.org
Background Protein disulfide isomerase A3 (PDIA3) is a member of the protein disulfide
isomerase (PDI) family that participates in protein folding through its protein disulfide …
isomerase (PDI) family that participates in protein folding through its protein disulfide …
The use of single-cell multi-omics in immuno-oncology
Single-cell multi-omics (scMulti-omics) has brought transformative insights into immuno-
oncology, demonstrating success in describing novel immune subsets and defining …
oncology, demonstrating success in describing novel immune subsets and defining …
[HTML][HTML] Expression pattern and prognostic significance of baculoviral inhibitor of apoptosis repeat-containing 5 (BIRC5) in breast cancer: a comprehensive analysis
Background Baculoviral inhibitor of apoptosis repeat-containing 5 or BIRC5, member of the
inhibitor of apoptosis (IAP), is a multitasking protein and among the top 100 deregulated …
inhibitor of apoptosis (IAP), is a multitasking protein and among the top 100 deregulated …
Single-cell analysis of the pan-cancer immune microenvironment and scTIME portal
F Hong, Q Meng, W Zhang, R Zheng, X Li… - Cancer Immunology …, 2021 - AACR
Single-cell sequencing opens a new era for the investigation of tumor immune
microenvironments (TIME). However, at single-cell resolution, a pan-cancer analysis that …
microenvironments (TIME). However, at single-cell resolution, a pan-cancer analysis that …
Discovery of targets for immune–metabolic antitumor drugs identifies estrogen-related receptor alpha
Drugs that kill tumors through multiple mechanisms have the potential for broad clinical
benefits. Here, we first developed an in silico multiomics approach (BipotentR) to find cancer …
benefits. Here, we first developed an in silico multiomics approach (BipotentR) to find cancer …
ICBatlas: a comprehensive resource for depicting immune checkpoint blockade therapy characteristics from transcriptome profiles
Immune checkpoint blockade (ICB) therapy provides remarkable clinical benefits for multiple
cancer types. Much work is currently being conducted to investigate the mechanisms of ICB …
cancer types. Much work is currently being conducted to investigate the mechanisms of ICB …
A novel disulfidptosis and glycolysis related risk score signature for prediction of prognosis and ICI therapeutic responsiveness in colorectal cancer
J Li, C Yang, Y Zheng - Scientific Reports, 2023 - nature.com
Disulfidptosis is a newly-identified non-programmed cell death mode with tight associations
with glucose metabolism. Elevated glycolysis is an important metabolic feature of tumor …
with glucose metabolism. Elevated glycolysis is an important metabolic feature of tumor …
A novel necroptosis-related gene signature in skin cutaneous melanoma prognosis and tumor microenvironment
B Song, P Wu, Z Liang, J Wang, Y Zheng… - Frontiers in …, 2022 - frontiersin.org
Background: Necroptosis has been identified recently as a newly recognized programmed
cell death that has an impact on tumor progression and prognosis, although the necroptosis …
cell death that has an impact on tumor progression and prognosis, although the necroptosis …
SPEED: single-cell pan-species atlas in the light of ecology and evolution for development and diseases
Y Chen, X Zhang, X Peng, Y Jin, P Ding… - Nucleic acids …, 2023 - academic.oup.com
It is a challenge to efficiently integrate and present the tremendous amounts of single-cell
data generated from multiple tissues of various species. Here, we create a new database …
data generated from multiple tissues of various species. Here, we create a new database …