The evolutionary significance of polyploidy

Y Van de Peer, E Mizrachi, K Marchal - Nature Reviews Genetics, 2017 - nature.com
Polyploidy, or the duplication of entire genomes, has been observed in prokaryotic and
eukaryotic organisms, and in somatic and germ cells. The consequences of polyploidization …

Polyploidy in liver development, homeostasis and disease

R Donne, M Saroul-Aïnama, P Cordier… - Nature reviews …, 2020 - nature.com
Polyploidy (or whole-genome duplication) is the condition of having more than two basic
sets of chromosomes. Polyploidization is well tolerated in many species and can lead to …

Genomics of hybridization and its evolutionary consequences

RJ Abbott, NH Barton, JM Good - Molecular …, 2016 - research-repository.st-andrews.ac …
Hybridization and its consequences have been of longstanding interest to evolutionary
biologists. Darwin (1859) included a chapter on hybrids and the expression and causes of …

Cistrans controls and regulatory novelty accompanying allopolyploidization

G Hu, JF Wendel - New Phytologist, 2019 - Wiley Online Library
Allopolyploidy is a prevalent process in plants, having important physiological, ecological
and evolutionary consequences. Transcriptomic responses to genomic merger and doubling …

Evolution and diversity of the cotton genome

G Hu, CE Grover, J Jareczek, D Yuan, Y Dong… - Cotton precision …, 2021 - Springer
We present an overview of Gossypium genome evolution and the implications of this
understanding for targeted breeding objectives. The cotton genus (Gossypium) contains …

[HTML][HTML] Intricate Distribution Patterns of Six Cytotypes of Allium oleraceum at a Continental Scale: Niche Expansion and Innovation Followed by Niche Contraction …

M Duchoslav, M Jandová, L Kobrlová… - Frontiers in Plant …, 2020 - frontiersin.org
The establishment and success of polyploids are thought to often be facilitated by ecological
niche differentiation from diploids. Unfortunately, most studies compared diploids and …

Sequencing and assembly of polyploid genomes

Y Wang, J Yu, M Jiang, W Lei, X Zhang… - Polyploidy: methods and …, 2023 - Springer
Polyploidy has been observed throughout major eukaryotic clades and has played a vital
role in the evolution of angiosperms. Recent polyploidizations often result in highly complex …

Unraveling gene function in agricultural species using gene co-expression networks

RJ Schaefer, JM Michno, CL Myers - Biochimica et Biophysica Acta (BBA) …, 2017 - Elsevier
Co-expression networks have been shown to be a powerful tool for inferring a gene's
function when little is known about it. With the advent of next generation sequencing …

Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids

G Hu, CE Grover, MA Arick, M Liu… - Briefings in …, 2021 - academic.oup.com
Polyploidy is a widespread phenomenon throughout eukaryotes. Due to the coexistence of
duplicated genomes, polyploids offer unique challenges for estimating gene expression …

Methylome and transcriptome analysis of alters leaf phenotype with autotetraploid in grape

X Xiang, Y Gao, J Cui, G Ren, C Yin, J Chang - Scientia Horticulturae, 2023 - Elsevier
The doubling of the plant genome causes obvious morphological and physiological
changes, and DNA 5-methylcytosine (5mCs) modification is a key epigenetic component …