Polyploidy and the proteome

DE Soltis, BB Misra, S Shan, S Chen… - Biochimica et Biophysica …, 2016 - Elsevier
Although major advances have been made during the past 20 years in our understanding of
the genetic and genomic consequences of polyploidy, our knowledge of polyploidy and the …

Unraveling cis and trans regulatory evolution during cotton domestication

Y Bao, G Hu, CE Grover, J Conover, D Yuan… - Nature …, 2019 - nature.com
Cis and trans regulatory divergence underlies phenotypic and evolutionary diversification.
Relatively little is understood about the complexity of regulatory evolution accompanying …

Insights into the ecology and evolution of polyploid plants through network analysis

JP Gallagher, CE Grover, G Hu, JF Wendel - Molecular ecology, 2016 - Wiley Online Library
Polyploidy is a widespread phenomenon throughout eukaryotes, with important ecological
and evolutionary consequences. Although genes operate as components of complex …

Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation

JR Tuttle, G Nah, MV Duke, DC Alexander, X Guan… - BMC genomics, 2015 - Springer
Background The morphogenesis of single-celled cotton fiber includes extreme elongation
and staged cell wall differentiation. Designing strategies for improving cotton fiber for textiles …

TaPHT1; 9‐4B and its transcriptional regulator TaMYB4‐7D contribute to phosphate uptake and plant growth in bread wheat

P Wang, G Li, G Li, S Yuan, C Wang, Y Xie… - New …, 2021 - Wiley Online Library
Efficient phosphate (Pi) uptake and utilisation are essential for promoting crop yield.
However, the underlying molecular mechanism is still poorly understood in complex crop …

Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

Y Qin, H Sun, P Hao, H Wang, C Wang, L Ma, H Wei… - BMC genomics, 2019 - Springer
Background Improving the yield and fiber quality of upland cotton is a goal of plant breeders.
However, increasing the yield and quality of cotton fibers is becoming more urgent. While …

Flavonoid biosynthetic and starch and sucrose metabolic pathways are involved in the pigmentation of naturally brown-colored cotton fibers

Z Peng, Q Gao, C Luo, W Gong, S Tang… - Industrial Crops and …, 2020 - Elsevier
The pigment of naturally brown-colored Upland cotton fibers is caused by condensed tannin
formed by the oxidation of proanthocyanidins (PAs). However, the specific roles of PA …

Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics

J van Wesemael, Y Hueber, E Kissel, N Campos… - Scientific reports, 2018 - nature.com
The fate of doubled genes, from allopolyploid or autopolyploid origin, is controlled at
multiple levels, resulting in the modern day cultivars. We studied the root growth of 3 …

Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton

G Hu, CE Grover, DL Vera, PY Lung… - Molecular Biology …, 2024 - academic.oup.com
Polyploidy is a prominent mechanism of plant speciation and adaptation, yet the mechanistic
understandings of duplicated gene regulation remain elusive. Chromatin structure dynamics …

Gene-expression novelty in allopolyploid cotton: a proteomic perspective

G Hu, J Koh, MJ Yoo, S Chen, JF Wendel - Genetics, 2015 - academic.oup.com
Allopolyploidization is accompanied by changes in gene expression that are thought to
contribute to phenotypic diversification. Here we describe global changes in the single …