Network-based prediction of drug combinations
Drug combinations, offering increased therapeutic efficacy and reduced toxicity, play an
important role in treating multiple complex diseases. Yet, our ability to identify and validate …
important role in treating multiple complex diseases. Yet, our ability to identify and validate …
Accelerating high-throughput virtual screening through molecular pool-based active learning
Structure-based virtual screening is an important tool in early stage drug discovery that
scores the interactions between a target protein and candidate ligands. As virtual libraries …
scores the interactions between a target protein and candidate ligands. As virtual libraries …
Nanoconfinement enabled non-covalently decorated MXene membranes for ion-sieving
Covalent modification is commonly used to tune the channel size and functionality of 2D
membranes. However, common synthesis strategies used to produce such modifications are …
membranes. However, common synthesis strategies used to produce such modifications are …
Deep learning for molecular design—a review of the state of the art
In the space of only a few years, deep generative modeling has revolutionized how we think
of artificial creativity, yielding autonomous systems which produce original images, music …
of artificial creativity, yielding autonomous systems which produce original images, music …
Generating 3D molecules conditional on receptor binding sites with deep generative models
The goal of structure-based drug discovery is to find small molecules that bind to a given
target protein. Deep learning has been used to generate drug-like molecules with certain …
target protein. Deep learning has been used to generate drug-like molecules with certain …
3d equivariant diffusion for target-aware molecule generation and affinity prediction
Rich data and powerful machine learning models allow us to design drugs for a specific
protein target\textit {in silico}. Recently, the inclusion of 3D structures during targeted drug …
protein target\textit {in silico}. Recently, the inclusion of 3D structures during targeted drug …
Generating 3d molecules for target protein binding
A fundamental problem in drug discovery is to design molecules that bind to specific
proteins. To tackle this problem using machine learning methods, here we propose a novel …
proteins. To tackle this problem using machine learning methods, here we propose a novel …
Mordred: a molecular descriptor calculator
Molecular descriptors are widely employed to present molecular characteristics in
cheminformatics. Various molecular-descriptor-calculation software programs have been …
cheminformatics. Various molecular-descriptor-calculation software programs have been …
Inhibitors of bacterial H2S biogenesis targeting antibiotic resistance and tolerance
Emergent resistance to all clinical antibiotics calls for the next generation of therapeutics.
Here we report an effective antimicrobial strategy targeting the bacterial hydrogen sulfide …
Here we report an effective antimicrobial strategy targeting the bacterial hydrogen sulfide …
Structure-based drug design with equivariant diffusion models
Structure-based drug design (SBDD) aims to design small-molecule ligands that bind with
high affinity and specificity to pre-determined protein targets. In this paper, we formulate …
high affinity and specificity to pre-determined protein targets. In this paper, we formulate …