Embracing scale‐dependence to achieve a deeper understanding of biodiversity and its change across communities

JM Chase, BJ McGill, DJ McGlinn, F May… - Ecology …, 2018 - Wiley Online Library
Because biodiversity is multidimensional and scale‐dependent, it is challenging to estimate
its change. However, it is unclear (1) how much scale‐dependence matters for empirical …

Can we manage fisheries with the inherent uncertainty from eDNA?

CL Jerde - Journal of fish biology, 2021 - Wiley Online Library
Environmental (e) DNA, as a general approach in aquatic systems, seeks to connect the
presence of species' genetic material in the water and hence to infer the species' physical …

The number of tree species on Earth

R Cazzolla Gatti, PB Reich… - Proceedings of the …, 2022 - National Acad Sciences
One of the most fundamental questions in ecology is how many species inhabit the Earth.
However, due to massive logistical and financial challenges and taxonomic difficulties …

Coverage‐based rarefaction and extrapolation: standardizing samples by completeness rather than size

A Chao, L Jost - Ecology, 2012 - Wiley Online Library
We propose an integrated sampling, rarefaction, and extrapolation methodology to compare
species richness of a set of communities based on samples of equal completeness (as …

[PDF][PDF] Species richness: estimation and comparison

A Chao, CH Chiu - Wiley StatsRef: statistics reference online, 2016 - researchgate.net
On the basis of the sampling data from an assemblage, estimation of species richness
(observed plus undetected) is statistically difficult especially for highly-diverse assemblages …

Hyperdominance in the Amazonian tree flora

H Ter Steege, NCA Pitman, D Sabatier, C Baraloto… - Science, 2013 - science.org
Introduction Recent decades have seen a major international effort to inventory tree
communities in the Amazon Basin and Guiana Shield (Amazonia), but the vast extent and …

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

RK Colwell, A Chao, NJ Gotelli, SY Lin… - Journal of plant …, 2012 - academic.oup.com
Aims In ecology and conservation biology, the number of species counted in a biodiversity
study is a key metric but is usually a biased underestimate of total species richness because …

Pesticides reduce regional biodiversity of stream invertebrates

MA Beketov, BJ Kefford… - Proceedings of the …, 2013 - National Acad Sciences
The biodiversity crisis is one of the greatest challenges facing humanity, but our
understanding of the drivers remains limited. Thus, after decades of studies and regulation …

Predicting data saturation in qualitative surveys with mathematical models from ecological research

VT Tran, R Porcher, VC Tran, P Ravaud - Journal of clinical epidemiology, 2017 - Elsevier
Objective Sample size in surveys with open-ended questions relies on the principle of data
saturation. Determining the point of data saturation is complex because researchers have …

The intestinal microbiota in acute anorexia nervosa and during renourishment: relationship to depression, anxiety, and eating disorder psychopathology

SC Kleiman, HJ Watson, EC Bulik-Sullivan… - Psychosomatic …, 2015 - journals.lww.com
Objective The relevance of the microbe-gut-brain axis to psychopathology is of interest in
anorexia nervosa (AN), as the intestinal microbiota plays a critical role in metabolic function …