An expanded CRISPR–Cas9-assisted recombineering toolkit for engineering genetically intractable Pseudomonas aeruginosa isolates

D Pankratz, NO Gomez, A Nielsen, A Mustafayeva… - Nature protocols, 2023 - nature.com
Much of our current understanding of microbiology is based on the application of genetic
engineering procedures. Since their inception (more than 30 years ago), methods based …

CRISPR interference-guided balancing of a biosynthetic mevalonate pathway increases terpenoid production

SK Kim, GH Han, W Seong, H Kim, SW Kim, DH Lee… - Metabolic …, 2016 - Elsevier
Methods for simple and efficient regulation of metabolic pathway genes are essential for
maximizing product titers and conversion yields, and for minimizing the metabolic burden …

[HTML][HTML] Refactoring the upper sugar metabolism of Pseudomonas putida for co-utilization of cellobiose, xylose, and glucose

P Dvořák, V de Lorenzo - Metabolic engineering, 2018 - Elsevier
Given its capacity to tolerate stress, NAD (P) H/NAD (P) balance, and increased ATP levels,
the platform strain Pseudomonas putida EM42, a genome-edited derivative of the soil …

Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes

APS Darlington, J Kim, JI Jiménez, DG Bates - Nature communications, 2018 - nature.com
Introduction of synthetic circuits into microbes creates competition between circuit and host
genes for shared cellular resources, such as ribosomes. This can lead to the emergence of …

Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria

EM Lammens, PI Nikel, R Lavigne - Nature communications, 2020 - nature.com
Non-model bacteria like Pseudomonas putida, Lactococcus lactis and other species have
unique and versatile metabolisms, offering unique opportunities for Synthetic Biology …

Muconic Acid Production Using Engineered Pseudomonas putida KT2440 and a Guaiacol-Rich Fraction Derived from Kraft Lignin

H Almqvist, H Veras, K Li… - ACS Sustainable …, 2021 - ACS Publications
Industrial lignin such as kraft lignin is an abundant feedstock for renewable chemicals and
materials. In this study, a process was developed for depolymerization of kraft lignin followed …

Chromosome engineering of the TCA cycle in Halomonas bluephagenesis for production of copolymers of 3-hydroxybutyrate and 3-hydroxyvalerate (PHBV)

Y Chen, XY Chen, HT Du, X Zhang, YM Ma… - Metabolic …, 2019 - Elsevier
Abstract Poly (3-hydroxybutyrate-co-3-hydroxyvalerate)(PHBV) is a promising biopolyester
with good mechanical properties and biodegradability. Large-scale production of PHBV is …

Promoter Engineering for Enhanced P(3HB-co-4HB) Production by Halomonas bluephagenesis

R Shen, J Yin, JW Ye, RJ Xiang, ZY Ning… - ACS Synthetic …, 2018 - ACS Publications
Promoters for the expression of heterologous genes in Halomonas bluephagenesis are
quite limited, and many heterologous promoters function abnormally in this strain. Pporin, a …

Engineering Halomonas bluephagenesis TD01 for non-sterile production of poly (3-hydroxybutyrate-co-4-hydroxybutyrate)

X Chen, J Yin, J Ye, H Zhang, X Che, Y Ma, M Li… - Bioresource …, 2017 - Elsevier
Abstract Poly (3-hydroxybutyrate-co-4-hydroxybutyrate), short as P (3HB-co-4HB), was
successfully produced by engineered Halomonas bluephagenesis TD01 grown in glucose …

[HTML][HTML] Synthetic control of plasmid replication enables target-and self-curing of vectors and expedites genome engineering of Pseudomonas putida

DC Volke, L Friis, NT Wirth, J Turlin, PI Nikel - Metabolic engineering …, 2020 - Elsevier
Genome engineering of non-conventional microorganisms calls for the development of
dedicated synthetic biology tools. Pseudomonas putida is a Gram-negative, non-pathogenic …