[HTML][HTML] A guide for kernel generalized regression methods for genomic-enabled prediction
A Montesinos-López, OA Montesinos-López… - Heredity, 2021 - nature.com
The primary objective of this paper is to provide a guide on implementing Bayesian
generalized kernel regression methods for genomic prediction in the statistical software R …
generalized kernel regression methods for genomic prediction in the statistical software R …
[HTML][HTML] Genome-Based Genotype × Environment Prediction Enhances Potato (Solanum tuberosum L.) Improvement Using Pseudo-Diploid and Polysomic Tetraploid …
Potato breeding must improve its efficiency by increasing the reliability of selection as well
as identifying a promising germplasm for crossing. This study shows the prediction accuracy …
as identifying a promising germplasm for crossing. This study shows the prediction accuracy …
Genomic prediction methods accounting for nonadditive genetic effects
The use of genomic information for prediction of future phenotypes or breeding values for
the candidates to selection has become a standard over the last decade. However, most …
the candidates to selection has become a standard over the last decade. However, most …
[HTML][HTML] Opportunities and limits of combining microbiome and genome data for complex trait prediction
M Pérez-Enciso, LM Zingaretti… - Genetics Selection …, 2021 - Springer
Background Analysis and prediction of complex traits using microbiome data combined with
host genomic information is a topic of utmost interest. However, numerous questions remain …
host genomic information is a topic of utmost interest. However, numerous questions remain …
Modeling genotype × environment interaction for single and multitrait genomic prediction in potato (Solanum tuberosum L.)
In this study, we extend research on genomic prediction (GP) to polysomic polyploid plant
species with the main objective to investigate single-trait (ST) and multitrait (MT) …
species with the main objective to investigate single-trait (ST) and multitrait (MT) …
Efficient algorithms for calculating epistatic genomic relationship matrices
The genomic relationship matrix plays a key role in the analysis of genetic diversity, genomic
prediction, and genome-wide association studies. The epistatic genomic relationship matrix …
prediction, and genome-wide association studies. The epistatic genomic relationship matrix …
Use of continuous genotypes for genomic prediction in sugarcane
Genomic selection in sugarcane faces challenges due to limited genomic tools and high
genomic complexity, particularly because of its high and variable ploidy. The classification of …
genomic complexity, particularly because of its high and variable ploidy. The classification of …
[HTML][HTML] Accounting for epistasis improves genomic prediction of phenotypes with univariate and bivariate models across environments
E Vojgani, T Pook, JWR Martini, AC Hölker… - Theoretical and Applied …, 2021 - Springer
Abstract Key Message The accuracy of genomic prediction of phenotypes can be increased
by including the top-ranked pairwise SNP interactions into the prediction model. Abstract We …
by including the top-ranked pairwise SNP interactions into the prediction model. Abstract We …
[HTML][HTML] Approximate genome-based kernel models for large data sets including main effects and interactions
The rapid development of molecular markers and sequencing technologies has made it
possible to use genomic prediction (GP) and selection (GS) in animal and plant breeding …
possible to use genomic prediction (GP) and selection (GS) in animal and plant breeding …
On Hadamard and Kronecker products in covariance structures for genotype× environment interaction
JWR Martini, J Crossa, FH Toledo… - The Plant …, 2020 - Wiley Online Library
When including genotype× environment interactions (G× E) in genomic prediction models,
Hadamard or Kronecker products have been used to model the covariance structure of …
Hadamard or Kronecker products have been used to model the covariance structure of …