cis-Regulatory Elements in Plant Development, Adaptation, and Evolution
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …
spatiotemporal patterning of gene expression necessary for appropriate development and …
Cis-regulatory sequences in plants: their importance, discovery, and future challenges
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …
function to coordinate responses to developmental and environmental cues is of paramount …
HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions
Y Huang, J An, S Sircar, C Bergis, CD Lopes… - Nature …, 2023 - nature.com
The complex and dynamic three-dimensional organization of chromatin within the nucleus
makes understanding the control of gene expression challenging, but also opens up …
makes understanding the control of gene expression challenging, but also opens up …
Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax
ZH Wang, XF Wang, T Lu, MR Li, P Jiang… - Nature …, 2022 - nature.com
All extant core-eudicot plants share a common ancestral genome that has experienced
cyclic polyploidizations and (re) diploidizations. Reshuffling of the ancestral core-eudicot …
cyclic polyploidizations and (re) diploidizations. Reshuffling of the ancestral core-eudicot …
Transposable elements orchestrate subgenome-convergent and-divergent transcription in common wheat
Y Zhang, Z Li, J Liu, Y Zhang, L Ye, Y Peng… - Nature …, 2022 - nature.com
The success of common wheat as a global staple crop was largely attributed to its genomic
diversity and redundancy due to the merge of different genomes, giving rise to the major …
diversity and redundancy due to the merge of different genomes, giving rise to the major …
The 3D architecture of the pepper genome and its relationship to function and evolution
The organization of chromatin into self-interacting domains is universal among eukaryotic
genomes, though how and why they form varies considerably. Here we report a …
genomes, though how and why they form varies considerably. Here we report a …
A wheat integrative regulatory network from large-scale complementary functional datasets enables trait-associated gene discovery for crop improvement
Gene regulation is central to all aspects of organism growth, and understanding it using
large-scale functional datasets can provide a whole view of biological processes controlling …
large-scale functional datasets can provide a whole view of biological processes controlling …
Bibliometric review of ATAC-Seq and its application in gene expression
L Luo, M Gribskov, S Wang - Briefings in Bioinformatics, 2022 - academic.oup.com
With recent advances in high-throughput next-generation sequencing, it is possible to
describe the regulation and expression of genes at multiple levels. An assay for transposase …
describe the regulation and expression of genes at multiple levels. An assay for transposase …
Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs
Since the first reported crop pangenome in 2014, advances in high‐throughput and cost‐
effective DNA sequencing technologies facilitated multiple such studies including the …
effective DNA sequencing technologies facilitated multiple such studies including the …
Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton
Transposable element (TE) amplification has been recognized as a driving force mediating
genome size expansion and evolution, but the consequences for shaping 3D genomic …
genome size expansion and evolution, but the consequences for shaping 3D genomic …