[HTML][HTML] Comprehensive Analysis of Codon Usage in Quercus Chloroplast Genome and Focus on psbA Gene

SL Shi, YQ Liu, RX Xia, L Qin - Genes, 2022 - mdpi.com
Quercus (oak) is an important economic and ecological tree species in the world, and it is
the necessary feed for oak silkworm feeding. Chloroplasts play an important role in green …

[HTML][HTML] Plastomes of Bletilla (Orchidaceae) and Phylogenetic Implications

S Han, R Wang, X Hong, C Wu, S Zhang… - International Journal of …, 2022 - mdpi.com
The genus Bletilla is a small genus of only five species distributed across Asia, including B.
chartacea, B. foliosa, B. formosana, B. ochracea and B. striata, which is of great medicinal …

Plastome evolution of Aeonium and Monanthes (Crassulaceae): insights into the variation of plastomic tRNAs, and the patterns of codon usage and aversion

S Han, D Bi, R Yi, H Ding, L Wu, X Kan - Planta, 2022 - Springer
Main conclusion This study reported 13 new plastomes from Aeonium and Monanthes, and
observed new markers for phylogeny and DNA barcoding, such as novel tRNA structures …

Codon usage bias and genetic diversity in chloroplast genomes of Elaeagnus species (Myrtiflorae: Elaeagnaceae)

C Li, L Zhou, J Nie, S Wu, W Li, Y Liu, Y Liu - Physiology and Molecular …, 2023 - Springer
Codon usage bias (CUB) reveals the characteristics of species and can be utilized to
understand their evolutionary relationship, increase the target genes' expression in the …

[HTML][HTML] Comparative and phylogenetic analysis of the complete chloroplast genomes of Uncaria (Rubiaceae) species

J Dai, Q Liu, X Xu, Z Tan, Y Lin, X Gao… - Frontiers in Plant …, 2023 - frontiersin.org
The genus Uncaria is famous for its high medicinal value. However, the high morphological
similarities and unclear interspecific genetic relationships have posed challenges to the …

[HTML][HTML] Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species

Y Wang, D Jiang, K Guo, L Zhao, F Meng, J Xiao… - BMC genomic data, 2023 - Springer
Abstract Background The Phenomenon of codon usage bias exists in the genomes of
prokaryotes and eukaryotes. The codon usage pattern is affected by environmental factors …

[HTML][HTML] An analysis of codon utilization patterns in the chloroplast genomes of three species of Coffea

Y Li, X Hu, M Xiao, J Huang, Y Lou, F Hu, X Fu, Y Li… - BMC Genomic …, 2023 - Springer
Background The chloroplast genome of plants is known for its small size and low mutation
and recombination rates, making it a valuable tool in plant phylogeny, molecular evolution …

[HTML][HTML] Codon Usage Analyses Reveal the Evolutionary Patterns among Plastid Genes of Saxifragales at a Larger-Sampling Scale

D Bi, S Han, J Zhou, M Zhao, S Zhang, X Kan - Genes, 2023 - mdpi.com
Saxifragales is a 15-family order of early-divergent Eudicots with a rich morphological
diversity and an ancient rapid radiation. Codon usage bias (CUB) analyses have emerged …

[HTML][HTML] Characterization of the chloroplast genome of Gleditsia species and comparative analysis

F Xiao, Y Zhao, X Wang, X Jian - Scientific Reports, 2024 - nature.com
The genus Gleditsia has significant medicinal and economic value, but information about the
chloroplast genomic characteristics of Gleditsia species has been limited. Using the Illumina …

Comparative analysis of Diospyros (Ebenaceae) plastomes: Insights into genomic features, mutational hotspots, and adaptive evolution

Y Huang, Q Ma, J Sun, LN Zhou, CJ Lai… - Ecology and …, 2023 - Wiley Online Library
Diospyros (Ebenaceae) is a widely distributed genus of trees and shrubs from pantropical to
temperate regions, with numerous species valued for their fruits (persimmons), timber, and …