[HTML][HTML] Current progress and open challenges for applying deep learning across the biosciences
Deep Learning (DL) has recently enabled unprecedented advances in one of the grand
challenges in computational biology: the half-century-old problem of protein structure …
challenges in computational biology: the half-century-old problem of protein structure …
[HTML][HTML] Glycoproteomics
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …
proteins and is a crucial protein modification in health and disease. The aim of …
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Y Perez-Riverol, J Bai, C Bandla… - Nucleic acids …, 2022 - academic.oup.com
Abstract The PRoteomics IDEntifications (PRIDE) database (https://www. ebi. ac. uk/pride/) is
the world's largest data repository of mass spectrometry-based proteomics data. PRIDE is …
the world's largest data repository of mass spectrometry-based proteomics data. PRIDE is …
[HTML][HTML] dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts
The dia-PASEF technology uses ion mobility separation to reduce signal interferences and
increase sensitivity in proteomic experiments. Here we present a two-dimensional peak …
increase sensitivity in proteomic experiments. Here we present a two-dimensional peak …
iProX in 2021: connecting proteomics data sharing with big data
T Chen, J Ma, Y Liu, Z Chen, N Xiao, Y Lu… - Nucleic acids …, 2022 - academic.oup.com
The rapid development of proteomics studies has resulted in large volumes of experimental
data. The emergence of big data platform provides the opportunity to handle these large …
data. The emergence of big data platform provides the opportunity to handle these large …
Extracellular vesicle analysis
A Hendrix, L Lippens, C Pinheiro, C Théry… - Nature Reviews …, 2023 - nature.com
Cells release small, phospholipid membrane-enclosed particles, collectively referred to as
extracellular vesicles (EVs), into their surroundings to enable intercellular communication …
extracellular vesicles (EVs), into their surroundings to enable intercellular communication …
Exercise plasma boosts memory and dampens brain inflammation via clusterin
Z De Miguel, N Khoury, MJ Betley, B Lehallier… - Nature, 2021 - nature.com
Physical exercise is generally beneficial to all aspects of human and animal health, slowing
cognitive ageing and neurodegeneration. The cognitive benefits of physical exercise are …
cognitive ageing and neurodegeneration. The cognitive benefits of physical exercise are …
The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity
Plants deploy cell-surface and intracellular leucine rich-repeat domain (LRR) immune
receptors to detect pathogens. LRR receptor kinases and LRR receptor proteins at the …
receptors to detect pathogens. LRR receptor kinases and LRR receptor proteins at the …
[HTML][HTML] A phosphoinositide signalling pathway mediates rapid lysosomal repair
Lysosomal dysfunction has been increasingly linked to disease and normal ageing,.
Lysosomal membrane permeabilization (LMP), a hallmark of lysosome-related diseases …
Lysosomal membrane permeabilization (LMP), a hallmark of lysosome-related diseases …
[HTML][HTML] B cell-derived GABA elicits IL-10+ macrophages to limit anti-tumour immunity
Small, soluble metabolites not only are essential intermediates in intracellular biochemical
processes, but can also influence neighbouring cells when released into the extracellular …
processes, but can also influence neighbouring cells when released into the extracellular …