[HTML][HTML] Senescent immune cells release grancalcin to promote skeletal aging

CJ Li, Y Xiao, YC Sun, WZ He, L Liu, M Huang, C He… - Cell metabolism, 2021 - cell.com
Skeletal aging is characterized by low bone turnover and marrow fat accumulation.
However, the underlying mechanism for this imbalance is unclear. Here, we show that …

Single-cell RNA sequencing maps endothelial metabolic plasticity in pathological angiogenesis

K Rohlenova, J Goveia, M García-Caballero… - Cell metabolism, 2020 - cell.com
Endothelial cell (EC) metabolism is an emerging target for anti-angiogenic therapy in tumor
angiogenesis and choroidal neovascularization (CNV), but little is known about individual …

[HTML][HTML] A quantitative tissue-specific landscape of protein redox regulation during aging

H Xiao, MP Jedrychowski, DK Schweppe, EL Huttlin… - Cell, 2020 - cell.com
Mammalian tissues engage in specialized physiology that is regulated through reversible
modification of protein cysteine residues by reactive oxygen species (ROS). ROS regulate a …

Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC–MS/MS

Y Bian, R Zheng, FP Bayer, C Wong, YC Chang… - Nature …, 2020 - nature.com
Nano-flow liquid chromatography tandem mass spectrometry (nano-flow LC–MS/MS) is the
mainstay in proteome research because of its excellent sensitivity but often comes at the …

Liver-fibrosis-activated transcriptional networks govern hepatocyte reprogramming and intra-hepatic communication

A Loft, AJ Alfaro, SF Schmidt, FB Pedersen… - Cell metabolism, 2021 - cell.com
Liver fibrosis is a strong predictor of long-term mortality in individuals with metabolic-
associated fatty liver disease; yet, the mechanisms underlying the progression from the …

MatrisomeDB: the ECM-protein knowledge database

X Shao, IN Taha, KR Clauser, Y Gao… - Nucleic acids …, 2020 - academic.oup.com
The extracellular matrix (ECM) is a complex and dynamic meshwork of cross-linked proteins
that supports cell polarization and functions and tissue organization and homeostasis. Over …

NCOA4-mediated ferritinophagy is a pancreatic cancer dependency via maintenance of iron bioavailability for iron–sulfur cluster proteins

N Santana-Codina, MQ Del Rey, KS Kapner, H Zhang… - Cancer discovery, 2022 - AACR
Pancreatic ductal adenocarcinomas (PDAC) depend on autophagy for survival; however,
the metabolic substrates that autophagy provides to drive PDAC progression are unclear …

The ubiquitin-dependent ATPase p97 removes cytotoxic trapped PARP1 from chromatin

DB Krastev, S Li, Y Sun, AJ Wicks, G Hoslett… - Nature cell …, 2022 - nature.com
Abstract Poly (ADP-ribose) polymerase (PARP) inhibitors elicit antitumour activity in
homologous recombination-defective cancers by trapping PARP1 in a chromatin-bound …

[HTML][HTML] Truncated FGFR2 is a clinically actionable oncogene in multiple cancers

D Zingg, J Bhin, J Yemelyanenko, SM Kas, F Rolfs… - Nature, 2022 - nature.com
Somatic hotspot mutations and structural amplifications and fusions that affect fibroblast
growth factor receptor 2 (encoded by FGFR2) occur in multiple types of cancer. However …

A high-stringency blueprint of the human proteome

S Adhikari, EC Nice, EW Deutsch, L Lane… - Nature …, 2020 - nature.com
Abstract The Human Proteome Organization (HUPO) launched the Human Proteome Project
(HPP) in 2010, creating an international framework for global collaboration, data sharing …