Systems chronotherapeutics

A Ballesta, PF Innominato, R Dallmann, DA Rand… - Pharmacological …, 2017 - ASPET
Chronotherapeutics aim at treating illnesses according to the endogenous biologic rhythms,
which moderate xenobiotic metabolism and cellular drug response. The molecular clocks …

Dissipative structures in biological systems: bistability, oscillations, spatial patterns and waves

A Goldbeter - … Transactions of the Royal Society A …, 2018 - royalsocietypublishing.org
The goal of this review article is to assess how relevant is the concept of dissipative structure
for understanding the dynamical bases of non-equilibrium self-organization in biological …

[HTML][HTML] Higher-order interactions shape collective dynamics differently in hypergraphs and simplicial complexes

Y Zhang, M Lucas, F Battiston - Nature communications, 2023 - nature.com
Higher-order networks have emerged as a powerful framework to model complex systems
and their collective behavior. Going beyond pairwise interactions, they encode structured …

Inferring biological networks by sparse identification of nonlinear dynamics

NM Mangan, SL Brunton, JL Proctor… - IEEE Transactions on …, 2016 - ieeexplore.ieee.org
Inferring the structure and dynamics of network models is critical to understanding the
functionality and control of complex systems, such as metabolic and regulatory biological …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Identification of small molecule activators of cryptochrome

T Hirota, JW Lee, PC St. John, M Sawa, K Iwaisako… - Science, 2012 - science.org
Impairment of the circadian clock has been associated with numerous disorders, including
metabolic disease. Although small molecules that modulate clock function might offer …

[图书][B] Mathematical modeling in systems biology: an introduction

BP Ingalls - 2013 - books.google.com
An introduction to the mathematical concepts and techniques needed for the construction
and analysis of models in molecular systems biology. Systems techniques are integral to …

[HTML][HTML] Molecular links between the circadian clock and the cell cycle

E Farshadi, GTJ van Der Horst, I Chaves - Journal of molecular biology, 2020 - Elsevier
Circadian control of cell division is well established in diverse organisms. Recent single-cell
studies on mouse fibroblasts have shown that the circadian clock and cell cycle systems are …

[HTML][HTML] Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator

J Lewis - Current Biology, 2003 - cell.com
Background: The pattern of somites is traced out by a mechanism involving oscillating gene
expression at the tail end of the embryo. In zebrafish, two linked oscillating genes, her1 and …

[HTML][HTML] Intercellular coupling confers robustness against mutations in the SCN circadian clock network

AC Liu, DK Welsh, CH Ko, HG Tran, EE Zhang… - Cell, 2007 - cell.com
Molecular mechanisms of the mammalian circadian clock have been studied primarily by
genetic perturbation and behavioral analysis. Here, we used bioluminescence imaging to …