[PDF][PDF] Protein-DNA recognition

RT Sauer, CO Pabo - Annu Rev Biochem, 1984 - nsm.buffalo.edu
Sequence-specific DNA-binding proteins regulate gene expression and also serve structural
and catalytic roles in other cellular processes. How do these proteins bind to double-helical …

Helix Geometry, Hydration, and G⋅ A Mismatch in a B-DNA Decamer

GG Privé, U Heinemann, S Chandrasegaran, LS Kan… - Science, 1987 - science.org
The DNA double helix is not a regular, featureless barberpole molecule. Different base
sequences have their own special signature, in the way that they influence groove width …

[图书][B] Principles of nucleic acid structure

W Saenger - 2013 - books.google.com
New textbooks at all levels of chemistry appear with great regularity. Some fields like basic
biochemistry, organic reaction mechanisms, and chemical ther modynamics are well …

Structure of catabolite gene activator protein at 2.9 Å resolution suggests binding to left-handed B-DNA

DB McKay, TA Steitz - Nature, 1981 - nature.com
The 2.9 Å resolution crystal structure of Escherichia coli catabolite gene activator protein
(CAP) completed with cyclic AMP reveals two distinct structural domains separated by a …

Structure of a B-DNA dodecamer: II. Influence of base sequence on helix structure

RE Dickerson, HR Drew - Journal of molecular biology, 1981 - Elsevier
Detailed examination of the structure of the B-DNA dodecamer CGCGAATTCGCG, obtained
by single-crystal X-ray analysis (Drew et al., 1981), reveals that the local helix parameters …

Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.

AV Fratini, ML Kopka, HR Drew… - Journal of Biological …, 1982 - ASBMB
A double-helical B-DNA dodecamer has been analyzed by single crystal x-ray diffraction
methods and refined independently in four variants: sequence CGCGAATTCGCG at 20 …

Conformation and dynamics of DNA and protein-DNA complexes by 31P NMR

DG Gorenstein - Chemical Reviews, 1994 - ACS Publications
31P NMR has developed as a powerful probe of the structure and dynamics of nucleicacids
and nucleic acid complexes in solution. Until recently 31P NMR studies of nucleic acids …

Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved “chromatin folding code”

P Vogt - Human genetics, 1990 - Springer
This review is based on a thorough description of the structure and sequence organization
of tandemly organized repetitive DNA sequence families in the human genome; it is aimed …

Chiral probes for the handedness of DNA helices: enantiomers of tris (4, 7-diphenylphenanthroline) ruthenium (II).

JK Barton, LA Basile, A Danishefsky… - Proceedings of the …, 1984 - National Acad Sciences
The chiral complexes tris (4, 7-diphenyl-1, 10-phenanthroline) ruthenium (II)(RuDIP) are
shown to be specific chemical probes with which to distinguish right-and left-handed DNA …

Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d (CGCGAATTCGCG) double helix:“curves”, dials and windows

G Ravishanker, S Swaminathan… - Journal of …, 1989 - Taylor & Francis
A new procedure for the analysis of the structure and molecular dynamics of duplex DNA is
introduced, in which comprehensive visualization of results and pattern recognition is greatly …