Exploring the diversity of plant metabolism

C Fang, AR Fernie, J Luo - Trends in Plant Science, 2019 - cell.com
Plants produce a huge array of metabolites, far more than those produced by most other
organisms. Unraveling this diversity and its underlying genetic variation has attracted …

Impacts of nitrogen and phosphorus: from genomes to natural ecosystems and agriculture

MS Guignard, AR Leitch, C Acquisti… - Frontiers in Ecology …, 2017 - frontiersin.org
Nitrogen (N) and/or phosphorus (P) availability can limit growth of primary producers across
most of the world's aquatic and terrestrial ecosystems. These constraints are commonly …

The Atlantic salmon genome provides insights into rediploidization

S Lien, BF Koop, SR Sandve, JR Miller, MP Kent… - Nature, 2016 - nature.com
The whole-genome duplication 80 million years ago of the common ancestor of salmonids
(salmonid-specific fourth vertebrate whole-genome duplication, Ss4R) provides unique …

Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell

JJ Doyle, JE Coate - International Journal of Plant Sciences, 2019 - journals.uchicago.edu
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …

Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower

PP Edger, R Smith, MR McKain, AM Cooley… - The Plant …, 2017 - academic.oup.com
Recent studies have shown that one of the parental subgenomes in ancient polyploids is
generally more dominant, having retained more genes and being more highly expressed, a …

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time

GC Conant, JA Birchler, JC Pires - Current opinion in plant biology, 2014 - Elsevier
Highlights•Dosage balance is fluid and will change over time.•Duplicate genes are
preserved by interplay of multiple overlapping mechanisms.•Distinguishing duplicate gene …

Multiple large-scale gene and genome duplications during the evolution of hexapods

Z Li, GP Tiley, SR Galuska… - Proceedings of the …, 2018 - National Acad Sciences
Polyploidy or whole genome duplication (WGD) is a major contributor to genome evolution
and diversity. Although polyploidy is recognized as an important component of plant …

Pure polyploidy: closing the gaps in autopolyploid research

JP Spoelhof, PS Soltis, DE Soltis - Journal of Systematics and …, 2017 - Wiley Online Library
Polyploidy (whole‐genome duplication, WGD) is an integral feature of eukaryotic evolution
with two main forms typically recognized, autopolyploidy and allopolyploidy. In plants, a …

Polyploidy as a fundamental phenomenon in evolution, development, adaptation and diseases

OV Anatskaya, AE Vinogradov - International Journal of Molecular …, 2022 - mdpi.com
DNA replication during cell proliferation is 'vertical'copying, which reproduces an initial
amount of genetic information. Polyploidy, which results from whole-genome duplication, is …

Nonadditive gene expression in polyploids

MJ Yoo, X Liu, JC Pires, PS Soltis… - Annual review of …, 2014 - annualreviews.org
Allopolyploidy involves hybridization and duplication of divergent parental genomes and
provides new avenues for gene expression. The expression levels of duplicated genes in …