Towards in situ high-resolution imaging of viruses and macromolecular complexes using cryo-electron tomography

Y Huang, Y Zhang, T Ni - Journal of Structural Biology, 2023 - Elsevier
Cryo-electron tomography and subtomogram averaging are rising and fast-evolving imaging
techniques to study biological events, providing structural information at an unprecedented …

Mechanical forces and the 3D genome

GV Shivashankar - Current Opinion in Structural Biology, 2023 - Elsevier
Traditionally, the field of genomics has been studied from a biochemical perspective.
Besides chemical influences, cells are subject to a variety of mechanical signals from their …

[HTML][HTML] Structural biology in cellulo: Minding the gap between conceptualization and realization

FL Kyrilis, JKK Low, JP Mackay, PL Kastritis - Current Opinion in Structural …, 2024 - Elsevier
Recent technological advances have deepened our perception of cellular structure.
However, most structural data doesn't originate from intact cells, limiting our understanding …

[HTML][HTML] Cell and developmental biology: grand challenges

AG Fisher - Frontiers in Cell and Developmental Biology, 2024 - frontiersin.org
Cellular and developmental biology spans a huge portion of modern biology, so providing a
brief synopsis of a decade of progress is a particularly daunting task. Collectively our …

[PDF][PDF] Charting the molecular landscape of the cell

H Ochner, TAM Bharat - Structure, 2023 - cell.com
Biological function of macromolecules is closely tied to their cellular location, as well as to
interactions with other molecules within the native environment of the cell. Therefore, to …

[HTML][HTML] FlowDenoising: Structure-preserving denoising in 3D electron microscopy (3DEM)

V González-Ruiz, JJ Fernández - SoftwareX, 2023 - Elsevier
FlowDenoising is a software tool that implements an adaptive Gaussian denoising filter that
preserves visually appreciable structures in volumes of 3D electron microscopy (3DEM). It …

The application and development of electron microscopy for three-dimensional reconstruction in life science: a review

J Zhao, X Yu, X Shentu, D Li - Cell and Tissue Research, 2024 - Springer
Imaging technologies have played a pivotal role in advancing biological research by
enabling visualization of biological structures and processes. While traditional electron …

[PDF][PDF] Insights into protein structure using cryogenic light microscopy

H Mazal, FF Wieser… - Biochemical Society …, 2023 - portlandpress.com
Fluorescence microscopy has witnessed many clever innovations in the last two decades,
leading to new methods such as structured illumination and super-resolution microscopies …

DomainFit: Identification of Protein Domains in cryo-EM maps at Intermediate Resolution using AlphaFold2-predicted Models

J Gao, M Tong, C Lee, J Gaertig, T Legal, KH Bui - Biorxiv, 2023 - biorxiv.org
Cryo-electron microscopy (cryo-EM) has revolutionized our understanding of
macromolecular complexes, enabling high-resolution structure determination. With the …

In situ cryo-electron tomography: a new method to elucidate cytoplasmic zoning at the molecular level

L Chen, Y Fukata, K Murata - The Journal of Biochemistry, 2024 - academic.oup.com
Cryo-electron microscopy was developed as a powerful tool for imaging biological
specimens in near-native conditions. Nowadays, advances in technology, equipment and …