DomainFit: Identification of protein domains in cryo-EM maps at intermediate resolution using AlphaFold2-predicted models
Cryoelectron microscopy (cryo-EM) has revolutionized the structural determination of
macromolecular complexes. With the paradigm shift to structure determination of highly …
macromolecular complexes. With the paradigm shift to structure determination of highly …
Hydrogen Plasma Inhibits Ion Beam Restructuring of GaP
Focused ion beam (FIB) techniques are employed widely for nanofabrication and
processing of materials and devices. However, ion irradiation often gives rise to severe …
processing of materials and devices. However, ion irradiation often gives rise to severe …
[HTML][HTML] Structural biology in cellulo: Minding the gap between conceptualization and realization
Recent technological advances have deepened our perception of cellular structure.
However, most structural data doesn't originate from intact cells, limiting our understanding …
However, most structural data doesn't originate from intact cells, limiting our understanding …
Mechanical forces and the 3D genome
GV Shivashankar - Current Opinion in Structural Biology, 2023 - Elsevier
Traditionally, the field of genomics has been studied from a biochemical perspective.
Besides chemical influences, cells are subject to a variety of mechanical signals from their …
Besides chemical influences, cells are subject to a variety of mechanical signals from their …
[HTML][HTML] Cell and developmental biology: grand challenges
AG Fisher - Frontiers in Cell and Developmental Biology, 2024 - frontiersin.org
Cellular and developmental biology spans a huge portion of modern biology, so providing a
brief synopsis of a decade of progress is a particularly daunting task. Collectively our …
brief synopsis of a decade of progress is a particularly daunting task. Collectively our …
[PDF][PDF] Insights into protein structure using cryogenic light microscopy
Fluorescence microscopy has witnessed many clever innovations in the last two decades,
leading to new methods such as structured illumination and super-resolution microscopies …
leading to new methods such as structured illumination and super-resolution microscopies …
Three-dimensional quantitative analysis of porosity evolution and inheritance from biomass to biochar through pyrolysis
K Shen, Z Wang, L Xia, W Ding, F Pan, K Jiao… - New Journal of …, 2024 - pubs.rsc.org
Three-dimensional electron tomography was employed to carry out a thorough and
quantitative analysis of the porosity in biomass tobacco and its resulting carbon materials …
quantitative analysis of the porosity in biomass tobacco and its resulting carbon materials …
[HTML][HTML] Analysis of protein–protein and protein–membrane interactions by isotope-edited infrared spectroscopy
SA Tatulian - Physical Chemistry Chemical Physics, 2024 - pubs.rsc.org
The objective of this work is to highlight the power of isotope-edited Fourier transform
infrared (FTIR) spectroscopy in resolving important problems encountered in biochemistry …
infrared (FTIR) spectroscopy in resolving important problems encountered in biochemistry …
In situ cryo-electron tomography: a new method to elucidate cytoplasmic zoning at the molecular level
L Chen, Y Fukata, K Murata - The Journal of Biochemistry, 2024 - academic.oup.com
Cryo-electron microscopy was developed as a powerful tool for imaging biological
specimens in near-native conditions. Nowadays, advances in technology, equipment and …
specimens in near-native conditions. Nowadays, advances in technology, equipment and …
Serialized On-grid Lift-In Sectioning for Tomography (SOLIST)
NHT Dung, G Perone, R Vazzana, FK Don, M Silva… - bioRxiv, 2023 - biorxiv.org
Cryo-focused ion beam milling has enabled groundbreaking structural discoveries in native
cells. Progress toward medically relevant applications, however, has been slow. We here …
cells. Progress toward medically relevant applications, however, has been slow. We here …