Identification of dominant signaling pathways from proteomics expression data

RA Zubarev, ML Nielsen, EM Fung, MM Savitski… - Journal of …, 2008 - Elsevier
The availability of the results of high-throughput analyses coming from 'omic'technologies
has been one of the major driving forces of pathway biology. Analytical pathway biology …

Studies of complex biological systems with applications to molecular medicine: the need to integrate transcriptomic and proteomic approaches

E Silvestri, A Lombardi, P de Lange… - BioMed Research …, 2011 - Wiley Online Library
Omics approaches to the study of complex biological systems with potential applications to
molecular medicine are attracting great interest in clinical as well as in basic biological …

Decoding 2D-PAGE complex maps: relevance to proteomics

MC Pietrogrande, N Marchetti, F Dondi… - … of Chromatography B, 2006 - Elsevier
This review describes two mathematical approaches useful for decoding the complex signal
of 2D-PAGE maps of protein mixtures. These methods are helpful for interpreting the large …

Sample preparation and bioinformatics in MALDI profiling of urinary proteins

P Zerefos, J Prados, S Kossida, A Kalousis… - … of Chromatography B, 2007 - Elsevier
One of the challenges of current proteomics research is identifying healthy and diseased
mass spectrometric (MS) patterns within biological fluids. As a result, sample preparation …

Usefulness of autoantigens depletion to detect autoantibody signatures by multiple affinity protein profiling

J Hardouin, JP Lasserre, L Canelle… - Journal of separation …, 2007 - Wiley Online Library
Patients with cancer produce specific autoantibodies against protein antigens present in
limited amount among a large background of immunoglobulins (Igs), nonrelevant as …

Liver proteome in diabetes type 1 rat model: Insulin-dependent and-independent changes

CP Braga, CHT Boone, RA Grove… - Omics: a journal of …, 2016 - liebertpub.com
Abstract Diabetes mellitus type 1 (DM1) is a major public health problem that continues to
burden the healthcare systems worldwide, costing exponentially more as the epidemic …

A conceptual paradigm of heart failure and systems biology approach

GE Louridas, KG Lourida - International journal of cardiology, 2012 - Elsevier
PURPOSE OF REVIEW: The understanding of heart failure syndrome is increased and the
interpretation of the related underlying mechanisms is improved by the integrated molecular …

Recent trends in system-scale integrative approaches for discovering protective antigens against mycobacterial pathogens

A Rana, S Thakur, G Kumar, Y Akhter - Frontiers in Genetics, 2018 - frontiersin.org
Mycobacterial infections are one of the deadliest infectious diseases still posing a major
health burden worldwide. The battle against these pathogens needs to focus on novel …

Plasma proteomic analysis in obese and overweight prepubertal children

Z Galata, G Moschonis, M Makridakis… - European journal of …, 2011 - Wiley Online Library
Eur J Clin Invest 2011; 41 (12): 1275–1283 Abstract Background Childhood obesity
represents one of the most challenging health problems of our century and is associated …

Understanding Bioremediation of Metals and Metalloids by Genomic Approaches

M Gürgan, Eİ İrez, S Adiloğlu - Omics Insights in Environmental …, 2022 - Springer
Several human activities such as urbanization, industrialization, mining activities,
agricultural activities, and even transportation lead to the spread and accumulation of many …