Analysis of codon usage patterns in Haloxylon ammodendron based on genomic and transcriptomic data

X Huang, Y Jiao, J Guo, Y Wang, G Chu, M Wang - Gene, 2022 - Elsevier
Haloxylon ammodendron, a xero-halophytic shrub of Chenopodiaceae, is a dominant
species in deserts, which has a strong drought and salt tolerance and plays an important …

[HTML][HTML] Ten Plastomes of Crassula (Crassulaceae) and Phylogenetic Implications

H Ding, S Han, Y Ye, D Bi, S Zhang, R Yi, J Gao… - Biology, 2022 - mdpi.com
Simple Summary Plastids are semi-autonomous plant organelles which play critical roles in
photosynthesis, stress response, and storage. The plastid genomes (plastomes) in …

[HTML][HTML] Complete chloroplast genome molecular structure, comparative and phylogenetic analyses of Sphaeropteris lepifera of Cyatheaceae family: a tree fern from …

Q Hu, R Qian, Y Zhang, X Ma, Y Ye, X Zhang, L Lin… - Scientific Reports, 2023 - nature.com
Sphaeropteris lepifera is a tree fern in the Cyatheaceae, a family that has played an
important role in the evolution of plant systems. This study aimed to analyze the complete …

Enhancement of efficient molecular biology tools for Tremella fuciformis spore

C Yu, Y Sun, C Yang, Y Fang, Q Meng, Y Qiu, P Lei… - Food Bioscience, 2024 - Elsevier
Tremella fuciformis, one of the most approved mushrooms worldwide, possesses both
edible and medicinal value. However, low transformation efficiency and high false positive …

[HTML][HTML] Study of codon usage patterns and influencing factors in rice yellow mottle virus based on coding sequence data

SU Rahman, S Nawaz, S Ullah, IU Rahman, MIU Haq… - Agronomy, 2022 - mdpi.com
Rice yellow mottle virus (RYMV), transmitted by chrysomelids, is one of the major viral
pathogens that has devastated rice production in Sub-Saharan Africa. RYMV is a member of …

[HTML][HTML] The chloroplast genomes of two medicinal species (Veronica anagallis-aquatica L. and Veronica undulata Wall.) and its comparative analysis with related …

Y Hai, Y Qian, M Yang, Y Zhang, H Xu, Y Yang… - Scientific …, 2024 - ncbi.nlm.nih.gov
Veronica anagallis-aquatica L. and Veronica undulata Wall. are widely used ethnomedicinal
plants in China. The two species have different clinical efficacies, while their extremely …

[HTML][HTML] Decoding the complete organelle genomic architecture of Stewartia gemmata: an early-diverging species in Theaceae

D Liu, Z Zhang, Y Hao, M Li, H Yu, X Zhang, H Mi… - BMC genomics, 2024 - Springer
Abstract Background Theaceae, comprising 300+ species, holds significance in biodiversity,
economics, and culture, notably including the globally consumed tea plant. Stewartia …

[HTML][HTML] Bioinformatic Analysis of Codon Usage Bias of HSP20 Genes in Four Cruciferous Species

H Ji, J Liu, Y Chen, X Yu, C Luo, L Sang, J Zhou… - Plants, 2024 - mdpi.com
Heat shock protein 20 (HSP20) serves as a chaperone and plays roles in numerous
biological processes, but the codon usage bias (CUB) of its genes has remained …

[HTML][HTML] Comparative Analysis of Codon Usage Patterns in Nuclear and Chloroplast Genome of Dalbergia (Fabaceae)

ZK Wang, Y Liu, HY Zheng, MQ Tang, SQ Xie - Genes, 2023 - mdpi.com
The Dalbergia plants are widely distributed across more than 130 tropical and subtropical
countries and have significant economic and medicinal value. Codon usage bias (CUB) is a …

[HTML][HTML] Complete Chloroplast Genome Sequence of a New Variety of Brasenia schreberi: Genome Characteristics, Comparative Analysis, and Phylogenetic …

Y Sun, M Li, J Ma, M He, Y Zheng - Agronomy, 2022 - mdpi.com
This study sequenced and assembled the chloroplast (cp) genome of Brasenia schreberi
cv.'Mahu Chuncai', a novel variety of B. schreberi rich in nutrients with distinctive …