Evolution of gene duplication in plants
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …
[HTML][HTML] Homoeologs: what are they and how do we infer them?
The evolutionary history of nearly all flowering plants includes a polyploidization event.
Homologous genes resulting from allopolyploidy are commonly referred to as 'homoeologs' …
Homologous genes resulting from allopolyploidy are commonly referred to as 'homoeologs' …
Reconstructing the genome of the most recent common ancestor of flowering plants
We describe here the reconstruction of the genome of the most recent common ancestor
(MRCA) of modern monocots and eudicots, accounting for 95% of extant angiosperms, with …
(MRCA) of modern monocots and eudicots, accounting for 95% of extant angiosperms, with …
Natural variation in ARF18 gene simultaneously affects seed weight and silique length in polyploid rapeseed
J Liu, W Hua, Z Hu, H Yang, L Zhang… - Proceedings of the …, 2015 - National Acad Sciences
Seed weight (SW), which is one of the three major factors influencing grain yield, has been
widely accepted as a complex trait that is controlled by polygenes, particularly in polyploid …
widely accepted as a complex trait that is controlled by polygenes, particularly in polyploid …
Solanum steroidal glycoalkaloids: structural diversity, biological activities, and biosynthesis
DK Zhao, Y Zhao, SY Chen, EJ Kennelly - Natural product reports, 2021 - pubs.rsc.org
Covering: up to 1 October 2020 Solanum steroidal glycoalkaloids (SGA), characterized by
nitrogenous steroidal aglycone and glycoside residues, mainly occur in the Solanum …
nitrogenous steroidal aglycone and glycoside residues, mainly occur in the Solanum …
Something old, something new: conserved enzymes and the evolution of novelty in plant specialized metabolism
Plants produce hundreds of thousands of small molecules known as specialized
metabolites, many of which are of economic and ecological importance. This remarkable …
metabolites, many of which are of economic and ecological importance. This remarkable …
Genome resources for the elite bread wheat cultivar Aikang 58 and mining of elite homeologous haplotypes for accelerating wheat improvement
J Jia, G Zhao, D Li, K Wang, C Kong, P Deng, X Yan… - Molecular Plant, 2023 - cell.com
Despite recent progress in crop genomics studies, the genomic changes brought about by
modern breeding selection are still poorly understood, thus hampering genomics-assisted …
modern breeding selection are still poorly understood, thus hampering genomics-assisted …
polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids
Low or uneven read depth is a common limitation of genotyping-by-sequencing (GBS) and
restriction site-associated DNA sequencing (RAD-seq), resulting in high missing data rates …
restriction site-associated DNA sequencing (RAD-seq), resulting in high missing data rates …
[HTML][HTML] Different modes of gene duplication show divergent evolutionary patterns and contribute differently to the expansion of gene families involved in important fruit …
Pear is an important fruit crop of the Rosaceae family and has experienced two rounds of
ancient whole-genome duplications (WGDs). However, whether different types of gene …
ancient whole-genome duplications (WGDs). However, whether different types of gene …
[HTML][HTML] Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.)
Background The recent release of the reference genome sequence assembly of flax, a self-
pollinated crop with 15 chromosome pairs, into chromosome-scale pseudomolecules …
pollinated crop with 15 chromosome pairs, into chromosome-scale pseudomolecules …