The ecology and evolution of key innovations

AH Miller, JT Stroud, JB Losos - Trends in Ecology & Evolution, 2023 - cell.com
The idea of 'key innovations' has long been influential in theoretical and empirical
approaches to understanding adaptive diversification. Despite originally revolving around …

Genomic architecture of adaptive radiation and hybridization in Alpine whitefish

R De-Kayne, OM Selz, DA Marques, D Frei… - Nature …, 2022 - nature.com
Adaptive radiations represent some of the most remarkable explosions of diversification
across the tree of life. However, the constraints to rapid diversification and how they are …

Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower

PP Edger, R Smith, MR McKain, AM Cooley… - The Plant …, 2017 - academic.oup.com
Recent studies have shown that one of the parental subgenomes in ancient polyploids is
generally more dominant, having retained more genes and being more highly expressed, a …

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation

JF Wendel, D Lisch, G Hu, AS Mason - Current opinion in genetics & …, 2018 - Elsevier
We consider the rapidly advancing discipline of plant evolutionary genomics, with a focus on
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …

The ancient wave of polyploidization events in flowering plants and their facilitated adaptation to environmental stress

L Zhang, S Wu, X Chang, X Wang, Y Zhao… - Plant, cell & …, 2020 - Wiley Online Library
Flowering plants, or angiosperms, consist of more than 300,000 species, far more than any
other land plant lineages. The accumulated evidence indicates that multiple ancient …

Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes

C Li, D Wickell, LY Kuo, X Chen, B Nie… - Proceedings of the …, 2024 - National Acad Sciences
Homosporous lycophytes (Lycopodiaceae) are a deeply diverged lineage in the plant tree of
life, having split from heterosporous lycophytes (Selaginella and Isoetes)~ 400 Mya …

Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

The draft genome of tropical fruit durian (Durio zibethinus)

BT Teh, K Lim, CH Yong, CCY Ng, SR Rao… - Nature …, 2017 - nature.com
Durian (Durio zibethinus) is a Southeast Asian tropical plant known for its hefty, spine-
covered fruit and sulfury and onion-like odor. Here we present a draft genome assembly of …

Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution

L Zhang, X Zhu, Y Zhao, J Guo, T Zhang… - Molecular Biology …, 2022 - academic.oup.com
Adaptation to cool climates has occurred several times in different angiosperm groups.
Among them, Pooideae, the largest grass subfamily with∼ 3,900 species including wheat …

Phylotranscriptomics in Cucurbitaceae reveal multiple whole-genome duplications and key morphological and molecular innovations

J Guo, W Xu, Y Hu, J Huang, Y Zhao, L Zhang… - Molecular Plant, 2020 - cell.com
The ability of climbing plants to grow upward along others to reach the canopy for
photosynthesis is hypothesized as a key innovation in flowering plants. Most members of the …