Innovations in genomics and big data analytics for personalized medicine and health care: A review

M Hassan, FM Awan, A Naz… - International journal of …, 2022 - mdpi.com
Big data in health care is a fast-growing field and a new paradigm that is transforming case-
based studies to large-scale, data-driven research. As big data is dependent on the …

Molecular subtypes of small cell lung cancer: a synthesis of human and mouse model data

CM Rudin, JT Poirier, LA Byers, C Dive… - Nature Reviews …, 2019 - nature.com
Small cell lung cancer (SCLC) is an exceptionally lethal malignancy for which more effective
therapies are urgently needed. Several lines of evidence, from SCLC primary human …

A biobank of small cell lung cancer CDX models elucidates inter-and intratumoral phenotypic heterogeneity

KL Simpson, R Stoney, KK Frese, N Simms, W Rowe… - Nature Cancer, 2020 - nature.com
Although small cell lung cancer (SCLC) is treated as a homogeneous disease, biopsies and
preclinical models reveal heterogeneity in transcriptomes and morphology. SCLC subtypes …

[HTML][HTML] Small cell lung cancer tumors and preclinical models display heterogeneity of neuroendocrine phenotypes

W Zhang, L Girard, YA Zhang, T Haruki… - … lung cancer research, 2018 - ncbi.nlm.nih.gov
Background Small cell lung cancer (SCLC) is a deadly, high grade neuroendocrine (NE)
tumor without recognized morphologic heterogeneity. However, over 30 years ago we …

Archetype tasks link intratumoral heterogeneity to plasticity and cancer hallmarks in small cell lung cancer

SM Groves, GV Ildefonso, CO McAtee, PMM Ozawa… - Cell systems, 2022 - cell.com
Small cell lung cancer (SCLC) tumors comprise heterogeneous mixtures of cell states,
categorized into neuroendocrine (NE) and non-neuroendocrine (non-NE) transcriptional …

A mechanism for epithelial-mesenchymal heterogeneity in a population of cancer cells

S Tripathi, P Chakraborty, H Levine… - PLoS computational …, 2020 - journals.plos.org
Epithelial-mesenchymal heterogeneity implies that cells within the same tumor can exhibit
different phenotypes—epithelial, mesenchymal, or one or more hybrid epithelial …

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers

DJ Wooten, SM Groves, DR Tyson, Q Liu… - PLoS computational …, 2019 - journals.plos.org
Adopting a systems approach, we devise a general workflow to define actionable subtypes
in human cancers. Applied to small cell lung cancer (SCLC), the workflow identifies four …

Phenotypic plasticity, bet-hedging, and androgen independence in prostate cancer: role of non-genetic heterogeneity

MK Jolly, P Kulkarni, K Weninger, J Orban… - Frontiers in …, 2018 - frontiersin.org
It is well known that genetic mutations can drive drug resistance and lead to tumor relapse.
Here, we focus on alternate mechanisms—those without mutations, such as phenotypic …

Unraveling non-genetic heterogeneity in cancer with dynamical models and computational tools

M Pillai, E Hojel, MK Jolly, Y Goyal - Nature Computational Science, 2023 - nature.com
Individual cells within an otherwise genetically homogenous population constantly undergo
fluctuations in their molecular state, giving rise to non-genetic heterogeneity. Such diversity …

Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks

JC Rozum, J Gómez Tejeda Zañudo, X Gan… - Science …, 2021 - science.org
We present new applications of parity inversion and time reversal to the emergence of
complex behavior from simple dynamical rules in stochastic discrete models. Our parity …