Longitudinal copy-number alteration analysis in plasma cell-free DNA of neuroendocrine neoplasms is a novel specific biomarker for diagnosis, prognosis, and follow …

G Boons, T Vandamme, L Mariën, W Lybaert… - Clinical Cancer …, 2022 - AACR
Purpose: As noninvasive biomarkers are an important unmet need for neuroendocrine
neoplasms (NEN), biomarker potential of genome-wide molecular profiling of plasma cell …

[HTML][HTML] A pan-cancer landscape of pathogenic somatic copy number variations

T Becchi, L Beltrame, L Mannarino, E Calura… - Journal of Biomedical …, 2023 - Elsevier
Abstract Objective Copy number variations (CNVs) play crucial roles in physiological and
pathological processes, including cancer. However, the functional implications of somatic …

GPX8+ cancer-associated fibroblast, as a cancer-promoting factor in lung adenocarcinoma, is related to the immunosuppressive microenvironment

Y Bai, T Han, Y Dong, C Liang, L Gao, Y Liu… - BMC Medical …, 2024 - Springer
Abstract Background Cancer-associated fibroblasts (CAFs) play a crucial role in the tumor
microenvironment of lung adenocarcinoma (LUAD) and are often associated with poorer …

Oncogenic Impact of TONSL, a Homologous Recombination Repair Protein at the Replication Fork, in Cancer Stem Cells

H Lee, S Ha, SG Choi, S Do, S Yoon, YK Kim… - International Journal of …, 2023 - mdpi.com
We investigated the role of TONSL, a mediator of homologous recombination repair (HRR),
in stalled replication fork double-strand breaks (DSBs) in cancer. Publicly available clinical …

Glassonet: Identifying discriminative gene sets among molecular subtypes of breast cancer

S Liu, Y Zhang, X Shang - IEEE/ACM Transactions on …, 2022 - ieeexplore.ieee.org
Breast cancer is a heterogeneous disease caused by various alterations in the genome or
transcriptome. Molecular subtypes of breast cancer have been reported, but useful …

The Progenetix oncogenomic resource in 2021

Q Huang, P Carrio-Cordo, B Gao, R Paloots… - Database, 2021 - academic.oup.com
In cancer, copy number aberrations (CNAs) represent a type of nearly ubiquitous and
frequently extensive structural genome variations. To disentangle the molecular …

Chromosomal alterations in sporadic medullary thyroid carcinoma and correlation with outcome

T Ramone, C Romei, R Ciampi… - Endocrine-related …, 2023 - erc.bioscientifica.com
Somatic copy number alterations (SCNA) involving either a whole chromosome or just one
of the arms, or even smaller parts, have been described in about 88% of human tumors. This …

Chromosome 7 to the rescue: overcoming chromosome 10 loss in gliomas

NU Nair, AA Schaffer, ME Gertz, K Cheng, J Zerbib… - bioRxiv, 2024 - biorxiv.org
The co-occurrence of chromosome 10 loss and chromosome 7 gain in gliomas is the most
frequent loss-gain co-aneuploidy pair in human cancers, a phenomenon that has been …

Chromosome 7 gain compensates for chromosome 10 loss in glioma

NU Nair, AA Schäffer, EM Gertz, K Cheng… - Cancer …, 2024 - aacrjournals.org
The co-occurrence of chromosome 10 loss and chromosome 7 gain in gliomas is the most
frequent loss–gain co-aneuploidy pair in human cancers. This phenomenon has been …

[PDF][PDF] Investigating the relation between copy number alterations and immune transcriptional footprints in the context of spatial transcriptomics in cancer

A Anagnostopoulou - 2024 - fse.studenttheses.ub.rug.nl
Cancer is a leading cause of death worldwide, necessitating novel therapies and effective
patient stratification. Copy Number Alterations (CNAs), characterized by chromosomal …