The arms race between KRAB–zinc finger proteins and endogenous retroelements and its impact on mammals

M Bruno, M Mahgoub… - Annual Review of …, 2019 - annualreviews.org
Nearly half of the human genome consists of endogenous retroelements (EREs) and their
genetic remnants, a small fraction of which carry the potential to propagate in the host …

Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence

H Hashimoto, YO Olanrewaju, Y Zheng… - Genes & …, 2014 - genesdev.cshlp.org
In mammalian DNA, cytosine occurs in several chemical forms, including unmodified
cytosine (C), 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine …

ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains

H Shi, R Strogantsev, N Takahashi… - Epigenetics & …, 2019 - Springer
Background KRAB zinc finger proteins (KZFPs) represent one of the largest families of DNA-
binding proteins in vertebrate genomes and appear to have evolved to silence transposable …

Structural basis for Klf4 recognition of methylated DNA

Y Liu, YO Olanrewaju, Y Zheng… - Nucleic acids …, 2014 - academic.oup.com
Transcription factor Krüppel-like factor 4 (Klf4), one of the factors directing cellular
reprogramming, recognizes the CpG dinucleotide (whether methylated or unmodified) within …

Cys2His2 zinc finger methyl-CpG binding proteins: getting a handle on methylated DNA

AJ Hodges, NO Hudson, BA Buck-Koehntop - Journal of Molecular Biology, 2020 - Elsevier
DNA methylation is an essential epigenetic modification involved in the maintenance of
genomic stability, preservation of cellular identity, and regulation of the transcriptional …

Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1

R Pluta, E Aragón, NA Prescott, L Ruiz… - Nature …, 2022 - nature.com
Abstract Forkhead box H1 (FoxH1) is an essential maternal pioneer factor during embryonic
development that binds to specific GG/GT-containing DNA target sequences. Here we have …

ZFP57 dictates allelic expression switch of target imprinted genes

W Jiang, J Shi, J Zhao, Q Wang… - Proceedings of the …, 2021 - National Acad Sciences
ZFP57 is a master regulator of genomic imprinting. It has both maternal and zygotic functions
that are partially redundant in maintaining DNA methylation at some imprinting control …

CH··· O hydrogen bonds mediate highly specific recognition of methylated CpG sites by the zinc finger protein kaiso

EN Nikolova, RL Stanfield, HJ Dyson, PE Wright - Biochemistry, 2018 - ACS Publications
Many eukaryotic transcription factors recognize the epigenetic marker 5-methylcytosine
(mC) at CpG sites in DNA. Despite their structural diversity, methyl-CpG-binding proteins …

Structural basis for effects of CpA modifications on C/EBPβ binding of DNA

J Yang, JR Horton, D Wang, R Ren, J Li… - Nucleic acids …, 2019 - academic.oup.com
C CAAT/e nhancer b inding p roteins (C/EBPs) regulate gene expression in a variety of
cells/tissues/organs, during a range of developmental stages, under both physiological and …

DNA methyltransferases are complementary in maintaining DNA methylation in embryonic stem cells

Y Liu, Z Xu, J Shi, Y Zhang, S Yang, Q Chen, C Song… - Iscience, 2022 - cell.com
ZFP57 and ZFP445 maintain genomic imprinting in mouse embryos. We found DNA
methylation was lost at most examined imprinting control regions (ICRs) in mouse Zfp57 …