The arms race between KRAB–zinc finger proteins and endogenous retroelements and its impact on mammals
M Bruno, M Mahgoub… - Annual Review of …, 2019 - annualreviews.org
Nearly half of the human genome consists of endogenous retroelements (EREs) and their
genetic remnants, a small fraction of which carry the potential to propagate in the host …
genetic remnants, a small fraction of which carry the potential to propagate in the host …
Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence
H Hashimoto, YO Olanrewaju, Y Zheng… - Genes & …, 2014 - genesdev.cshlp.org
In mammalian DNA, cytosine occurs in several chemical forms, including unmodified
cytosine (C), 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine …
cytosine (C), 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC), 5-formylcytosine …
ZFP57 regulation of transposable elements and gene expression within and beyond imprinted domains
H Shi, R Strogantsev, N Takahashi… - Epigenetics & …, 2019 - Springer
Background KRAB zinc finger proteins (KZFPs) represent one of the largest families of DNA-
binding proteins in vertebrate genomes and appear to have evolved to silence transposable …
binding proteins in vertebrate genomes and appear to have evolved to silence transposable …
Structural basis for Klf4 recognition of methylated DNA
Y Liu, YO Olanrewaju, Y Zheng… - Nucleic acids …, 2014 - academic.oup.com
Transcription factor Krüppel-like factor 4 (Klf4), one of the factors directing cellular
reprogramming, recognizes the CpG dinucleotide (whether methylated or unmodified) within …
reprogramming, recognizes the CpG dinucleotide (whether methylated or unmodified) within …
Cys2His2 zinc finger methyl-CpG binding proteins: getting a handle on methylated DNA
AJ Hodges, NO Hudson, BA Buck-Koehntop - Journal of Molecular Biology, 2020 - Elsevier
DNA methylation is an essential epigenetic modification involved in the maintenance of
genomic stability, preservation of cellular identity, and regulation of the transcriptional …
genomic stability, preservation of cellular identity, and regulation of the transcriptional …
Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1
Abstract Forkhead box H1 (FoxH1) is an essential maternal pioneer factor during embryonic
development that binds to specific GG/GT-containing DNA target sequences. Here we have …
development that binds to specific GG/GT-containing DNA target sequences. Here we have …
ZFP57 dictates allelic expression switch of target imprinted genes
W Jiang, J Shi, J Zhao, Q Wang… - Proceedings of the …, 2021 - National Acad Sciences
ZFP57 is a master regulator of genomic imprinting. It has both maternal and zygotic functions
that are partially redundant in maintaining DNA methylation at some imprinting control …
that are partially redundant in maintaining DNA methylation at some imprinting control …
CH··· O hydrogen bonds mediate highly specific recognition of methylated CpG sites by the zinc finger protein kaiso
EN Nikolova, RL Stanfield, HJ Dyson, PE Wright - Biochemistry, 2018 - ACS Publications
Many eukaryotic transcription factors recognize the epigenetic marker 5-methylcytosine
(mC) at CpG sites in DNA. Despite their structural diversity, methyl-CpG-binding proteins …
(mC) at CpG sites in DNA. Despite their structural diversity, methyl-CpG-binding proteins …
Structural basis for effects of CpA modifications on C/EBPβ binding of DNA
C CAAT/e nhancer b inding p roteins (C/EBPs) regulate gene expression in a variety of
cells/tissues/organs, during a range of developmental stages, under both physiological and …
cells/tissues/organs, during a range of developmental stages, under both physiological and …
DNA methyltransferases are complementary in maintaining DNA methylation in embryonic stem cells
ZFP57 and ZFP445 maintain genomic imprinting in mouse embryos. We found DNA
methylation was lost at most examined imprinting control regions (ICRs) in mouse Zfp57 …
methylation was lost at most examined imprinting control regions (ICRs) in mouse Zfp57 …