Oxford Nanopore MinION sequencing and genome assembly
H Lu, F Giordano, Z Ning - Genomics, Proteomics and …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …
Ten years of next-generation sequencing technology
EL Van Dijk, H Auger, Y Jaszczyszyn, C Thermes - Trends in genetics, 2014 - cell.com
Ten years ago next-generation sequencing (NGS) technologies appeared on the market.
During the past decade, tremendous progress has been made in terms of speed, read …
During the past decade, tremendous progress has been made in terms of speed, read …
[HTML][HTML] Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
The Illumina DNA sequencing platform generates accurate but short reads, which can be
used to produce accurate but fragmented genome assemblies. Pacific Biosciences and …
used to produce accurate but fragmented genome assemblies. Pacific Biosciences and …
hybridSPAdes: an algorithm for hybrid assembly of short and long reads
Motivation: Recent advances in single molecule real-time (SMRT) and nanopore
sequencing technologies have enabled high-quality assemblies from long and inaccurate …
sequencing technologies have enabled high-quality assemblies from long and inaccurate …
[HTML][HTML] Assessing the performance of the oxford nanopore technologies minion
T Laver, J Harrison, PA O'neill, K Moore… - Biomolecular detection …, 2015 - Elsevier
Abstract The Oxford Nanopore Technologies (ONT) MinION is a new sequencing technology
that potentially offers read lengths of tens of kilobases (kb) limited only by the length of DNA …
that potentially offers read lengths of tens of kilobases (kb) limited only by the length of DNA …
[HTML][HTML] Coagulase-negative staphylococci pathogenomics
X Argemi, Y Hansmann, K Prola, G Prévost - International journal of …, 2019 - mdpi.com
Coagulase-negative Staphylococci (CoNS) are skin commensal bacteria. Besides their role
in maintaining homeostasis, CoNS have emerged as major pathogens in nosocomial …
in maintaining homeostasis, CoNS have emerged as major pathogens in nosocomial …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
A Bissett, A Fitzgerald, T Meintjes, PM Mele… - …, 2016 - academic.oup.com
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
A Benítez-Páez, KJ Portune, Y Sanz - Gigascience, 2016 - academic.oup.com
Background The miniaturised and portable DNA sequencer MinION™ has been released to
the scientific community within the framework of an early access programme to evaluate its …
the scientific community within the framework of an early access programme to evaluate its …
[HTML][HTML] Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment
Biological features can be inferred, based on genomic data, for many microbial lineages that
remain uncultured. However, cultivation is important for characterizing an organism's …
remain uncultured. However, cultivation is important for characterizing an organism's …
Biodegradation of phthalate esters by Paracoccus kondratievae BJQ0001 isolated from Jiuqu (Baijiu fermentation starter) and identification of the ester bond …
Y Xu, KAHM Minhazul, X Wang, X Liu, X Li… - Environmental …, 2020 - Elsevier
Phthalate ester (PAE) pollution is an increasing problem globally. Paracoccus kondratievae
BJQ0001 was isolated from the fermentation starter of Baijiu and showed an efficient …
BJQ0001 was isolated from the fermentation starter of Baijiu and showed an efficient …