Oxford Nanopore MinION sequencing and genome assembly

H Lu, F Giordano, Z Ning - Genomics, Proteomics and …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …

Ten years of next-generation sequencing technology

EL Van Dijk, H Auger, Y Jaszczyszyn, C Thermes - Trends in genetics, 2014 - cell.com
Ten years ago next-generation sequencing (NGS) technologies appeared on the market.
During the past decade, tremendous progress has been made in terms of speed, read …

[HTML][HTML] Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

RR Wick, LM Judd, CL Gorrie… - PLoS computational …, 2017 - journals.plos.org
The Illumina DNA sequencing platform generates accurate but short reads, which can be
used to produce accurate but fragmented genome assemblies. Pacific Biosciences and …

hybridSPAdes: an algorithm for hybrid assembly of short and long reads

D Antipov, A Korobeynikov, JS McLean… - …, 2016 - academic.oup.com
Motivation: Recent advances in single molecule real-time (SMRT) and nanopore
sequencing technologies have enabled high-quality assemblies from long and inaccurate …

[HTML][HTML] Assessing the performance of the oxford nanopore technologies minion

T Laver, J Harrison, PA O'neill, K Moore… - Biomolecular detection …, 2015 - Elsevier
Abstract The Oxford Nanopore Technologies (ONT) MinION is a new sequencing technology
that potentially offers read lengths of tens of kilobases (kb) limited only by the length of DNA …

[HTML][HTML] Coagulase-negative staphylococci pathogenomics

X Argemi, Y Hansmann, K Prola, G Prévost - International journal of …, 2019 - mdpi.com
Coagulase-negative Staphylococci (CoNS) are skin commensal bacteria. Besides their role
in maintaining homeostasis, CoNS have emerged as major pathogens in nosocomial …

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele… - …, 2016 - academic.oup.com
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

A Benítez-Páez, KJ Portune, Y Sanz - Gigascience, 2016 - academic.oup.com
Background The miniaturised and portable DNA sequencer MinION™ has been released to
the scientific community within the framework of an early access programme to evaluate its …

[HTML][HTML] Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment

L Wurch, RJ Giannone, BS Belisle, C Swift… - Nature …, 2016 - nature.com
Biological features can be inferred, based on genomic data, for many microbial lineages that
remain uncultured. However, cultivation is important for characterizing an organism's …

Biodegradation of phthalate esters by Paracoccus kondratievae BJQ0001 isolated from Jiuqu (Baijiu fermentation starter) and identification of the ester bond …

Y Xu, KAHM Minhazul, X Wang, X Liu, X Li… - Environmental …, 2020 - Elsevier
Phthalate ester (PAE) pollution is an increasing problem globally. Paracoccus kondratievae
BJQ0001 was isolated from the fermentation starter of Baijiu and showed an efficient …