Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences

S Moran, C Arribas, M Esteller - Epigenomics, 2016 - Taylor & Francis
Aim: DNA methylation is the best known epigenetic mark. Cancer and other pathologies
show an altered DNA methylome. However, delivering complete DNA methylation maps is …

[HTML][HTML] Genetic and epigenetic factors determining NAFLD risk

W Jonas, A Schürmann - Molecular metabolism, 2021 - Elsevier
Background Hepatic steatosis is a common chronic liver disease that can progress into more
severe stages of NAFLD or promote the development of life-threatening secondary diseases …

[HTML][HTML] Non-invasive early detection of cancer four years before conventional diagnosis using a blood test

X Chen, J Gole, A Gore, Q He, M Lu, J Min… - Nature …, 2020 - nature.com
Early detection has the potential to reduce cancer mortality, but an effective screening test
must demonstrate asymptomatic cancer detection years before conventional diagnosis in a …

[HTML][HTML] Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease

J Moss, J Magenheim, D Neiman, H Zemmour… - Nature …, 2018 - nature.com
Methylation patterns of circulating cell-free DNA (cfDNA) contain rich information about
recent cell death events in the body. Here, we present an approach for unbiased …

The origin of highly elevated cell-free DNA in healthy individuals and patients with pancreatic, colorectal, lung, or ovarian cancer

AK Mattox, C Douville, Y Wang, M Popoli, J Ptak… - Cancer discovery, 2023 - AACR
Cell-free DNA (cfDNA) concentrations from patients with cancer are often elevated
compared with those of healthy controls, but the sources of this extra cfDNA have never …

Comprehensive analysis of DNA methylation data with RnBeads

Y Assenov, F Müller, P Lutsik, J Walter, T Lengauer… - Nature …, 2014 - nature.com
RnBeads is a software tool for large-scale analysis and interpretation of DNA methylation
data, providing a user-friendly analysis workflow that yields detailed hypertext reports …

Glioma CpG island methylator phenotype (G-CIMP): biological and clinical implications

TM Malta, CF de Souza, TS Sabedot, TC Silva… - Neuro …, 2018 - academic.oup.com
Gliomas are a heterogeneous group of brain tumors with distinct biological and clinical
properties. Despite advances in surgical techniques and clinical regimens, treatment of high …

[HTML][HTML] A DNA methylation atlas of normal human cell types

N Loyfer, J Magenheim, A Peretz, G Cann, J Bredno… - Nature, 2023 - nature.com
DNA methylation is a fundamental epigenetic mark that governs gene expression and
chromatin organization, thus providing a window into cellular identity and developmental …

An EMT‐related gene signature for the prognosis of human bladder cancer

R Cao, L Yuan, B Ma, G Wang, W Qiu… - Journal of cellular and …, 2020 - Wiley Online Library
The transition from non–muscle‐invasive bladder cancer (NMIBC) to muscle‐invasive
bladder cancer (MIBC) is detrimental to bladder cancer (BLCA) patients. Here, we aimed to …

[HTML][HTML] Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas

GA Herrgott, JM Snyder, R She, TM Malta… - Nature …, 2023 - nature.com
Recurrence of meningiomas is unpredictable by current invasive methods based on
surgically removed specimens. Identification of patients likely to recur using noninvasive …