Implications of the hybrid epithelial/mesenchymal phenotype in metastasis

MK Jolly, M Boareto, B Huang, D Jia, M Lu… - Frontiers in …, 2015 - frontiersin.org
Transitions between epithelial and mesenchymal phenotypes–the epithelial to
mesenchymal transition (EMT) and its reverse the mesenchymal to epithelial transition …

Control of multistability

AN Pisarchik, U Feudel - Physics Reports, 2014 - Elsevier
Multistability or coexistence of different attractors for a given set of parameters is one of the
most exciting phenomena in dynamical systems. It can be found in different areas of science …

Modeling and simulation of genetic regulatory systems: a literature review

H De Jong - Journal of computational biology, 2002 - liebertpub.com
In order to understand the functioning of organisms on the molecular level, we need to know
which genes are expressed, when and where in the organism, and to which extent. The …

[图书][B] Physical biology of the cell

R Phillips, J Kondev, J Theriot, H Garcia - 2012 - taylorfrancis.com
Physical Biology of the Cell is a textbook for a first course in physical biology or biophysics
for undergraduate or graduate students. It maps the huge and complex landscape of cell …

Bistability, bifurcations, and Waddington's epigenetic landscape

JE Ferrell - Current biology, 2012 - cell.com
Waddington's epigenetic landscape is probably the most famous and most powerful
metaphor in developmental biology. Cells, represented by balls, roll downhill through a …

[HTML][HTML] Gene regulatory logic for reading the Sonic Hedgehog signaling gradient in the vertebrate neural tube

N Balaskas, A Ribeiro, J Panovska, E Dessaud… - Cell, 2012 - cell.com
Secreted signals, known as morphogens, provide the positional information that organizes
gene expression and cellular differentiation in many developing tissues. In the vertebrate …

[HTML][HTML] Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations

TB Kepler, TC Elston - Biophysical journal, 2001 - cell.com
Transcriptional regulation is an inherently noisy process. The origins of this stochastic
behavior can be traced to the random transitions among the discrete chemical states of …

Multistable and dynamic CRISPRi-based synthetic circuits

J Santos-Moreno, E Tasiudi, J Stelling… - Nature …, 2020 - nature.com
Gene expression control based on CRISPRi (clustered regularly interspaced short
palindromic repeats interference) has emerged as a powerful tool for creating synthetic gene …

Sampling rare switching events in biochemical networks

RJ Allen, PB Warren, PR Ten Wolde - Physical review letters, 2005 - APS
Bistable biochemical switches are widely found in gene regulatory networks and signal
transduction pathways. Their switching dynamics are difficult to study, however, because …

Dynamical landscapes of cell fate decisions

M Sáez, J Briscoe, DA Rand - Interface focus, 2022 - royalsocietypublishing.org
The generation of cellular diversity during development involves differentiating cells
transitioning between discrete cell states. In the 1940s, the developmental biologist Conrad …