[PDF][PDF] Functional long non-coding RNAs evolve from junk transcripts
AF Palazzo, EV Koonin - Cell, 2020 - cell.com
Transcriptome studies reveal pervasive transcription of complex genomes, such as those of
mammals. Despite popular arguments for functionality of most, if not all, of these transcripts …
mammals. Despite popular arguments for functionality of most, if not all, of these transcripts …
[HTML][HTML] The dynamism of transposon methylation for plant development and stress adaptation
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …
Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation
The largest genus in the conifer family Pinaceae is Pinus, with over 100 species. The size
and complexity of their genomes (∼ 20–40 Gb, 2 n= 24) have delayed the arrival of a well …
and complexity of their genomes (∼ 20–40 Gb, 2 n= 24) have delayed the arrival of a well …
[HTML][HTML] Transposable elements and genome size variations in plants
SI Lee, NS Kim - Genomics & informatics, 2014 - ncbi.nlm.nih.gov
Although the number of protein-coding genes is not highly variable between plant taxa, the
DNA content in their genomes is highly variable, by as much as 2,056-fold from a 1C amount …
DNA content in their genomes is highly variable, by as much as 2,056-fold from a 1C amount …
[HTML][HTML] Annotation of Siberian larch (Larix sibirica Ledeb.) nuclear genome—One of the most cold-resistant tree species in the only deciduous genus in Pinaceae
EI Bondar, SI Feranchuk, KA Miroshnikova, VV Sharov… - Plants, 2022 - mdpi.com
The recent release of the nuclear, chloroplast and mitochondrial genome assemblies of
Siberian larch (Larix sibirica Ledeb.), one of the most cold-resistant tree species in the only …
Siberian larch (Larix sibirica Ledeb.), one of the most cold-resistant tree species in the only …
[HTML][HTML] C. elegans Germ Cells Show Temperature and Age-Dependent Expression of Cer1, a Gypsy/Ty3-Related Retrotransposon
S Dennis, U Sheth, JL Feldman, KA English… - PLoS …, 2012 - journals.plos.org
Virus-like particles (VLPs) have not been observed in Caenorhabditis germ cells, although
nematode genomes contain low numbers of retrotransposon and retroviral sequences. We …
nematode genomes contain low numbers of retrotransposon and retroviral sequences. We …
The C-and G-value paradox with polyploidy, repeatomes, introns, phenomes and cell economy
IY Choi, EC Kwon, NS Kim - Genes & genomics, 2020 - Springer
Background The apparent disconnection between biological complexity and both genome
size (C-value) and gene number (G-value) is one of the long-standing biological puzzles …
size (C-value) and gene number (G-value) is one of the long-standing biological puzzles …
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting
M Lexa, P Jedlicka, I Vanat, M Cervenansky… - …, 2020 - academic.oup.com
Abstract Motivation Transposable elements (TEs) in eukaryotes often get inserted into one
another, forming sequences that become a complex mixture of full-length elements and their …
another, forming sequences that become a complex mixture of full-length elements and their …
[HTML][HTML] Insights into the loblolly pine genome: characterization of BAC and fosmid sequences
JL Wegrzyn, BY Lin, JJ Zieve, WM Dougherty… - PLoS …, 2013 - journals.plos.org
Despite their prevalence and importance, the genome sequences of loblolly pine, Norway
spruce, and white spruce, three ecologically and economically important conifer species, are …
spruce, and white spruce, three ecologically and economically important conifer species, are …
[HTML][HTML] Shaping plant adaptability, genome structure and gene expression through transposable element epigenetic control: focus on methylation
L Galindo-González, F Sarmiento, MA Quimbaya - Agronomy, 2018 - mdpi.com
In plants, transposable elements (TEs) represent a large fraction of the genome, with
potential to alter gene expression and produce genomic rearrangements. Epigenetic control …
potential to alter gene expression and produce genomic rearrangements. Epigenetic control …