Connectomics: comprehensive approaches for whole-brain mapping

S Shibata, Y Komaki, F Seki, MO Inouye, T Nagai… - …, 2015 - academic.oup.com
The aim of connectomics analysis is to understand whole-brain neural connections. This is
accomplished using new biotechnologies. Here, we provide an overview of the recent …

[HTML][HTML] An RNAi screen in a novel model of oriented divisions identifies the actin-capping protein Z β as an essential regulator of spindle orientation

F Di Pietro, L Valon, Y Li, R Goïame, A Genovesio… - Current Biology, 2017 - cell.com
Oriented cell divisions are controlled by a conserved molecular cascade involving Gαi, LGN,
and NuMA. We developed a new cellular model of oriented cell divisions combining …

[HTML][HTML] Multicolor lineage tracing using in vivo time-lapse imaging reveals coordinated death of clonally related cells in the developing vertebrate brain

NL Brockway, ZT Cook, MJ O'Gallagher… - Developmental …, 2019 - Elsevier
The global mechanisms that regulate and potentially coordinate cell proliferation & death in
developing neural regions are not well understood. In particular, it is not clear how or …

Conserved and divergent functions of Pax6 underlie species-specific neurogenic patterns in the developing amniote brain

W Yamashita, M Takahashi, T Kikkawa… - …, 2018 - journals.biologists.com
The evolution of unique organ structures is associated with changes in conserved
developmental programs. However, characterizing the functional conservation and variation …

Concise review: understanding clonal dynamics in homeostasis and injury through multicolor lineage tracing

E Roy, Z Neufeld, J Livet, K Khosrotehrani - Stem Cells, 2014 - academic.oup.com
Lineage tracing is an essential tool to study stem cell fate. Although traditional lineage
tracing techniques have considerably advanced our understanding of stem cell behavior …

[HTML][HTML] DNA Barcoding Technology for Lineage Recording and Tracing to Resolve Cell Fate Determination

IS Kim - Cells, 2023 - mdpi.com
In various biological contexts, cells receive signals and stimuli that prompt them to change
their current state, leading to transitions into a future state. This change underlies the …

Towards integrated oncogenic marker recognition through mutual information‐based statistically significant feature extraction: an association rule mining based study …

S Mallik, Z Zhao - Quantitative Biology, 2017 - Wiley Online Library
Background Marker detection is an important task in complex disease studies. Here we
provide an association rule mining (ARM) based approach for identifying integrated markers …

[HTML][HTML] Neurogenic decisions require a cell cycle independent function of the CDC25B phosphatase

F Bonnet, A Molina, M Roussat, M Azais, S Bel-Vialar… - Elife, 2018 - elifesciences.org
A fundamental issue in developmental biology and in organ homeostasis is understanding
the molecular mechanisms governing the balance between stem cell maintenance and …

[HTML][HTML] Spatiotemporal analyses of neural lineages after embryonic and postnatal progenitor targeting combining different reporters

M Figueres-Oñate, J García-Marqués… - Frontiers in …, 2015 - frontiersin.org
Genetic lineage tracing with electroporation is one of the most powerful techniques to target
neural progenitor cells and their progeny. However, the spatiotemporal relationship between …

[HTML][HTML] Advanced Techniques Using In Vivo Electroporation to Study the Molecular Mechanisms of Cerebral Development Disorders

C Yang, A Shitamukai, S Yang… - International journal of …, 2023 - mdpi.com
The mammalian cerebral cortex undergoes a strictly regulated developmental process.
Detailed in situ visualizations, imaging of these dynamic processes, and in vivo functional …