[HTML][HTML] Best practices for single-cell analysis across modalities
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
[PDF][PDF] Wound healing, fibroblast heterogeneity, and fibrosis
Fibroblasts are highly dynamic cells that play a central role in tissue repair and fibrosis.
However, the mechanisms by which they contribute to both physiologic and pathologic …
However, the mechanisms by which they contribute to both physiologic and pathologic …
Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy
Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal cancer entity characterized by a
heterogeneous genetic landscape and an immunosuppressive tumor microenvironment …
heterogeneous genetic landscape and an immunosuppressive tumor microenvironment …
[HTML][HTML] Statistical and machine learning methods for spatially resolved transcriptomics data analysis
The recent advancement in spatial transcriptomics technology has enabled multiplexed
profiling of cellular transcriptomes and spatial locations. As the capacity and efficiency of the …
profiling of cellular transcriptomes and spatial locations. As the capacity and efficiency of the …
[HTML][HTML] Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease
In the past decade, single-cell technologies have proliferated and improved from their
technically challenging beginnings to become common laboratory methods capable of …
technically challenging beginnings to become common laboratory methods capable of …
[HTML][HTML] A relay velocity model infers cell-dependent RNA velocity
RNA velocity provides an approach for inferring cellular state transitions from single-cell
RNA sequencing (scRNA-seq) data. Conventional RNA velocity models infer universal …
RNA sequencing (scRNA-seq) data. Conventional RNA velocity models infer universal …
[HTML][HTML] The specious art of single-cell genomics
Dimensionality reduction is standard practice for filtering noise and identifying relevant
features in large-scale data analyses. In biology, single-cell genomics studies typically begin …
features in large-scale data analyses. In biology, single-cell genomics studies typically begin …
[HTML][HTML] UniTVelo: temporally unified RNA velocity reinforces single-cell trajectory inference
The recent breakthrough of single-cell RNA velocity methods brings attractive promises to
reveal directed trajectory on cell differentiation, states transition and response to …
reveal directed trajectory on cell differentiation, states transition and response to …
[HTML][HTML] Recent advances in the field of single-cell proteomics
V Petrosius, EM Schoof - Translational Oncology, 2023 - Elsevier
The field of single-cell omics is rapidly progressing. Although DNA and RNA sequencing-
based methods have dominated the field to date, global proteome profiling has also entered …
based methods have dominated the field to date, global proteome profiling has also entered …
DeepVelo: Single-cell transcriptomic deep velocity field learning with neural ordinary differential equations
Recent advances in single-cell sequencing technologies have provided unprecedented
opportunities to measure the gene expression profile and RNA velocity of individual cells …
opportunities to measure the gene expression profile and RNA velocity of individual cells …