[HTML][HTML] A pulmonologist's guide to perform and analyse cross-species single lung cell transcriptomics

P Pennitz, H Kirsten, VD Friedrich… - European …, 2022 - Eur Respiratory Soc
Single-cell ribonucleic acid sequencing is becoming widely employed to study biological
processes at a novel resolution depth. The ability to analyse transcriptomes of multiple …

[HTML][HTML] Understanding Fibroblast Heterogeneity in Form and Function

JB Parker, C Valencia, D Akras, SE DiIorio, MF Griffin… - Biomedicines, 2023 - mdpi.com
Historically believed to be a homogeneous cell type that is often overlooked, fibroblasts are
more and more understood to be heterogeneous in nature. Though the mechanisms behind …

The transcription factor NFIL3/E4BP4 regulates the developmental stage–specific acquisition of basophil function

J Park, Y Cho, D Yang, H Yang, D Lee, M Kubo… - Journal of Allergy and …, 2024 - Elsevier
Background Basophils are rare but important effector cells in many allergic disorders.
Contrary to their early progenitors, the terminal developmental processes of basophils in …

Reconstructing data-driven governing equations for cell phenotypic transitions: integration of data science and systems biology

J Xing - Physical Biology, 2022 - iopscience.iop.org
Cells with the same genome can exist in different phenotypes and can change between
distinct phenotypes when subject to specific stimuli and microenvironments. Some examples …

RETRACTED ARTICLE: Ensemble learning-based gene signature and risk model for predicting prognosis of triple-negative breast cancer

T Li, S Chen, Y Zhang, Q Zhao, K Ma… - Functional & …, 2023 - search.proquest.com
Although medical science has been fully developed, due to the high heterogeneity of triple-
negative breast cancer (TNBC), it is still difficult to use reasonable and precise treatment. In …

[HTML][HTML] How single-cell techniques help us look into lung cancer heterogeneity and immunotherapy

P Liao, Q Huang, J Zhang, Y Su, R Xiao, S Luo… - Frontiers in …, 2023 - frontiersin.org
Lung cancer patients tend to have strong intratumoral and intertumoral heterogeneity and
complex tumor microenvironment, which are major contributors to the efficacy of and drug …

[HTML][HTML] The progressive application of single-cell RNA sequencing technology in cardiovascular diseases

Y Ke, H Jian-Yuan, Z Ping, W Yue, X Na, Y Jian… - Biomedicine & …, 2022 - Elsevier
The mortality rate of cardiovascular disease ranks first in the world. Its pathogenesis involves
not only internal factors such as immunity, inflammation, metabolic disorders, and self …

Single-cell methods in myeloproliferative neoplasms: old questions, new technologies

JM O'Sullivan, AJ Mead, B Psaila - Blood, 2023 - ashpublications.org
Myeloproliferative neoplasms (MPN) are a group of clonal stem cell–derived hematopoietic
malignancies driven by aberrant Janus kinase-signal transducer and activator of …

[HTML][HTML] Single-cell gene fusion detection by scFusion

Z Jin, W Huang, N Shen, J Li, X Wang, J Dong… - Nature …, 2022 - nature.com
Gene fusions can play important roles in tumor initiation and progression. While fusion
detection so far has been from bulk samples, full-length single-cell RNA sequencing (scRNA …

[HTML][HTML] Single-cell RNA-sequencing data analysis reveals a highly correlated triphasic transcriptional response to SARS-CoV-2 infection

PA Gutiérrez, SF Elena - Communications Biology, 2022 - nature.com
Single-cell RNA sequencing (scRNA-seq) is currently one of the most powerful techniques
available to study the transcriptional response of thousands of cells to an external …