[HTML][HTML] Control of the embryonic stem cell state

RA Young - Cell, 2011 - cell.com
Embryonic stem cells and induced pluripotent stem cells hold great promise for regenerative
medicine. These cells can be propagated in culture in an undifferentiated state but can be …

The nature of embryonic stem cells

G Martello, A Smith - Annual review of cell and developmental …, 2014 - annualreviews.org
Mouse embryonic stem (ES) cells perpetuate in vitro the broad developmental potential of
naïve founder cells in the preimplantation embryo. ES cells self-renew relentlessly in culture …

[HTML][HTML] Master transcription factors and mediator establish super-enhancers at key cell identity genes

WA Whyte, DA Orlando, D Hnisz, BJ Abraham, CY Lin… - Cell, 2013 - cell.com
Summary Master transcription factors Oct4, Sox2, and Nanog bind enhancer elements and
recruit Mediator to activate much of the gene expression program of pluripotent embryonic …

The RNA-binding protein repertoire of embryonic stem cells

SC Kwon, H Yi, K Eichelbaum, S Föhr… - Nature structural & …, 2013 - nature.com
RNA-binding proteins (RBPs) have essential roles in RNA-mediated gene regulation, and
yet annotation of RBPs is limited mainly to those with known RNA-binding domains. To …

[HTML][HTML] An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment

N Lin, KY Chang, Z Li, K Gates, ZA Rana, J Dang… - Molecular cell, 2014 - cell.com
Here, we generated a genome-scale shRNA library targeting long intergenic noncoding
RNAs (lincRNAs) in the mouse. We performed an unbiased loss-of-function study in mouse …

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

I Lee, UM Blom, PI Wang, JE Shim… - Genome …, 2011 - genome.cshlp.org
Network “guilt by association”(GBA) is a proven approach for identifying novel disease
genes based on the observation that similar mutational phenotypes arise from functionally …

[HTML][HTML] A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs

J Kim, AJ Woo, J Chu, JW Snow, Y Fujiwara, CG Kim… - Cell, 2010 - cell.com
Summary c-Myc (Myc) is an important transcriptional regulator in embryonic stem (ES) cells,
somatic cell reprogramming, and cancer. Here, we identify a Myc-centered regulatory …

Lineage-specific enhancers activate self-renewal genes in macrophages and embryonic stem cells

EL Soucie, Z Weng, L Geirsdóttir, K Molawi, J Maurizio… - Science, 2016 - science.org
INTRODUCTION In many organs of the body, differentiated cells are frequently lost and
need to be replaced as part of normal homeostatic tissue maintenance or in response to …

Structure of complete Pol II–DSIF–PAF–SPT6 transcription complex reveals RTF1 allosteric activation

SM Vos, L Farnung, A Linden, H Urlaub… - Nature Structural & …, 2020 - nature.com
Transcription by RNA polymerase II (Pol II) is carried out by an elongation complex. We
previously reported an activated porcine Pol II elongation complex, EC*, encompassing the …

System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

KTG Rigbolt, TA Prokhorova, V Akimov… - Science …, 2011 - science.org
To elucidate cellular events underlying the pluripotency of human embryonic stem cells
(hESCs), we performed parallel quantitative proteomic and phosphoproteomic analyses of …