Phylogenomic resolution of order-and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes

PR Timilsena, EK Wafula, CF Barrett… - Frontiers in Plant …, 2022 - frontiersin.org
We assess relationships among 192 species in all 12 monocot orders and 72 of 77 families,
using 602 conserved single-copy (CSC) genes and 1375 benchmarking single-copy …

Plastid phylogenomics and molecular evolution of Alismatales

TG Ross, CF Barrett, M Soto Gomez, VKY Lam… - …, 2016 - Wiley Online Library
Past phylogenetic studies of the monocot order Alismatales left several higher‐order
relationships unresolved. We addressed these uncertainties using a nearly complete genus …

Organellomic data sets confirm a cryptic consensus on (unrooted) land‐plant relationships and provide new insights into bryophyte molecular evolution

D Bell, Q Lin, WK Gerelle, S Joya… - American Journal of …, 2020 - Wiley Online Library
Premise Phylogenetic trees of bryophytes provide important evolutionary context for land
plants. However, published inferences of overall embryophyte relationships vary …

Mitochondrial genomic data are effective at placing mycoheterotrophic lineages in plant phylogeny

Q Lin, TWA Braukmann, M Soto Gomez… - New …, 2022 - Wiley Online Library
Fully mycoheterotrophic plants can be difficult to place in plant phylogeny due to elevated
substitution rates associated with photosynthesis loss. This potentially limits the …

Phylotranscriptomic analyses of mycoheterotrophic monocots show a continuum of convergent evolutionary changes in expressed nuclear genes from three …

PR Timilsena, CF Barrett… - Genome biology and …, 2023 - academic.oup.com
Mycoheterotrophy is an alternative nutritional strategy whereby plants obtain sugars and
other nutrients from soil fungi. Mycoheterotrophy and associated loss of photosynthesis have …

The Gastrodia menghaiensis (Orchidaceae) genome provides new insights of orchid mycorrhizal interactions

Y Jiang, X Hu, Y Yuan, X Guo, MW Chase, S Ge, J Li… - BMC Plant …, 2022 - Springer
Background To illustrate the molecular mechanism of mycoheterotrophic interactions
between orchids and fungi, we assembled chromosome-level reference genome of …

Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii

NJ Klimpert, JLS Mayer, DS Sarzi… - American Journal of …, 2022 - Wiley Online Library
Premise Pogoniopsis likely represents an independent photosynthesis loss in orchids. We
use phylogenomic data to better identify the phylogenetic placement of this fully …

The Highly Reduced Plastome of Mycoheterotrophic Sciaphila (Triuridaceae) Is Colinear with Its Green Relatives and Is under Strong Purifying Selection

VKY Lam, M Soto Gomez… - Genome Biology and …, 2015 - academic.oup.com
The enigmatic monocot family Triuridaceae provides a potentially useful model system for
studying the effects of an ancient loss of photosynthesis on the plant plastid genome, as all …

In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi

F Lallemand, ML Martin‐Magniette, F Gilard… - The Plant …, 2019 - Wiley Online Library
Mycoheterotrophic plants have lost photosynthesis and obtain carbon through mycorrhizal
fungi colonizing their roots. They are likely to have evolved from mixotrophic ancestors …

Mycoheterotrophic plants preferentially target arbuscular mycorrhizal fungi that are highly connected to autotrophic plants

SIF Gomes, MA Fortuna, J Bascompte… - New …, 2022 - Wiley Online Library
How mycoheterotrophic plants that obtain carbon and soil nutrients from fungi are integrated
in the usually mutualistic arbuscular mycorrhizal networks is unknown. Here, we compare …