Artificial intelligence in the prediction of protein–ligand interactions: recent advances and future directions
New drug production, from target identification to marketing approval, takes over 12 years
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
Scoring functions for protein-ligand binding affinity prediction using structure-based deep learning: a review
The rapid and accurate in silico prediction of protein-ligand binding free energies or binding
affinities has the potential to transform drug discovery. In recent years, there has been a …
affinities has the potential to transform drug discovery. In recent years, there has been a …
Theoretical studies on the molecular properties, toxicity, and biological efficacy of 21 new chemical entities
R Srivastava - ACS omega, 2021 - ACS Publications
New chemical entities (NCEs) such as small molecules and antibody–drug conjugates have
strong binding affinity for biological targets, which provide deep insights into structure …
strong binding affinity for biological targets, which provide deep insights into structure …
Synthesis, vibrational analysis, molecular property investigation, and molecular docking of new benzenesulphonamide-based carboxamide derivatives against …
Zinc chloride mediated synthesis, density functional theory (DFT) studies and molecular
docking of new carboxamide derivatives containing sulphonamide functionality is reported …
docking of new carboxamide derivatives containing sulphonamide functionality is reported …
Machine learning enables prediction of Pyrrolysyl-tRNA synthetase substrate specificity
Q Zhang, W Zheng, Z Song, Q Zhang, L Yang… - ACS Synthetic …, 2023 - ACS Publications
Knowledge about the substrate scope for a given enzyme is informative for elucidating
biochemical pathways and also for expanding applications of the enzyme. However, no …
biochemical pathways and also for expanding applications of the enzyme. However, no …
Building intuition for binding free energy calculations: Bound state definition, restraints, and symmetry
E Duboué-Dijon, J Hénin - The Journal of Chemical Physics, 2021 - pubs.aip.org
The theory behind computation of absolute binding free energies using explicit-solvent
molecular simulations is well-established, yet somewhat complex, with counter-intuitive …
molecular simulations is well-established, yet somewhat complex, with counter-intuitive …
Exploring Securigera securidaca Seeds as a Source of Potential CDK1 Inhibitors: Identification of Hippeastrine and Naringenin as Promising Hit Candidates
MEM Abdelbagi, GM Al-Mazaideh, AE Ahmed… - Processes, 2023 - mdpi.com
CDK1 (cyclin dependent kinase 1) is a key regulator of the cell cycle and is frequently
dysregulated in cancer, making it a promising target for anticancer therapy. Securigera …
dysregulated in cancer, making it a promising target for anticancer therapy. Securigera …
[HTML][HTML] Machine learning small molecule properties in drug discovery
Abstract Machine learning (ML) is a promising approach for predicting small molecule
properties in drug discovery. Here, we provide a comprehensive overview of various ML …
properties in drug discovery. Here, we provide a comprehensive overview of various ML …
Quantifying functional-group-like structural fragments in molecules and its applications in drug design
G Mukherjee, A Braka, S Wu - Journal of Chemical Information …, 2023 - ACS Publications
A functional group in a molecule is a structural fragment consisting of a few atoms or a single
atom that imparts reactivity to a molecule. Hence, defining functional groups is crucial in …
atom that imparts reactivity to a molecule. Hence, defining functional groups is crucial in …
Virtual screening of potential anticancer drugs based on microbial products
The development of microbial products for cancer treatment has been in the spotlight in
recent years. In order to accelerate the lengthy and expensive drug development process, in …
recent years. In order to accelerate the lengthy and expensive drug development process, in …