Cationic noncovalent interactions: energetics and periodic trends

MT Rodgers, PB Armentrout - Chemical Reviews, 2016 - ACS Publications
In this review, noncovalent interactions of ions with neutral molecules are discussed. After
defining the scope of the article, which excludes anionic and most protonated systems …

Interaction of Cu+ with cytosine and formation of i-motif-like C–M+–C complexes: alkali versus coinage metals

J Gao, G Berden, MT Rodgers… - Physical Chemistry …, 2016 - pubs.rsc.org
The Watson–Crick structure of DNA is among the most well-known molecular structures of
our time. However, alternative base-pairing motifs are also known to occur, often depending …

IRMPD action spectroscopy of alkali metal cation–cytosine complexes: effects of alkali metal cation size on gas phase conformation

B Yang, RR Wu, NC Polfer, G Berden… - Journal of the …, 2013 - ACS Publications
The gas-phase structures of alkali metal cation-cytosine complexes generated by
electrospray ionization are probed via infrared multiple photon dissociation (IRMPD) action …

Cryogenic IR and UV spectroscopy of isomer-selected cytosine radical cation

F Molina, J Dezalay, S Soorkia, M Broquier… - Physical Chemistry …, 2022 - pubs.rsc.org
Oxidation of the nucleobases is of great concern for the stability of DNA strands and is
considered as a source of mutagenesis and cancer. However, precise spectroscopy data, in …

Capturing transient endoperoxide in the singlet oxygen oxidation of guanine

W Lu, J Liu - Chemistry–A European Journal, 2016 - Wiley Online Library
The chemistry of singlet O2 toward the guanine base of DNA is highly relevant to DNA
lesion, mutation, cell death, and pathological conditions. This oxidative damage is initiated …

Generation of an accurate CCSD (T)/CBS data set and assessment of DFT methods for the binding strengths of group I metal–nucleic acid complexes

BTA Boychuk, SP Meyer, SD Wetmore - Frontiers in Chemistry, 2023 - frontiersin.org
Accurate information about interactions between group I metals and nucleic acids is
required to understand the roles these metals play in basic cellular functions, disease …

Assessment of the Accuracy of DFT-Predicted Li+–Nucleic Acid Binding Energies

BTA Boychuk, YE Rebecca Jeong… - Journal of Chemical …, 2021 - ACS Publications
Understanding how lithium interacts with complex biosystems is crucial for uncovering the
roles of this alkali metal in biology and designing extraction techniques for battery …

The protonated and sodiated dimers of proline studied by IRMPD spectroscopy in the N–H and O–H stretching region and computational methods

YJ Alahmadi, A Gholami, TD Fridgen - Physical Chemistry Chemical …, 2014 - pubs.rsc.org
IRMPD spectroscopy and computational chemistry techniques have been used to determine
that the proton-and sodium-bound dimers of proline exist as a mixture of a number of …

Gas‐phase interactions between lead (II) ions and cytosine: Tandem mass spectrometry and infrared multiple‐photon dissociation spectroscopy study

JY Salpin, V Haldys, S Guillaumont… - …, 2014 - Wiley Online Library
Gas‐phase interactions between Pb2+ ions and cytosine (C) were studied by combining
tandem mass spectrometry, infrared multiple photon dissociation spectroscopy, and density …

Alkali metal cation binding affinities of cytosine in the gas phase: revisited

B Yang, MT Rodgers - Physical Chemistry Chemical Physics, 2014 - pubs.rsc.org
Binding of metal cations to the nucleobases can influence base pairing, base stacking and
nucleobase tautomerism. Gas-phase condensation of dc discharge generated alkali metal …