Epigenetics and depression

S Penner-Goeke, EB Binder - Dialogues in clinical neuroscience, 2019 - Taylor & Francis
The risk for major depression is both genetically and environmentally determined. It has
been proposed that epigenetic mechanisms could mediate the lasting increases in …

Cell-type deconvolution from DNA methylation: a review of recent applications

AJ Titus, RM Gallimore, LA Salas… - Human molecular …, 2017 - academic.oup.com
Recent advances in cell-type deconvolution approaches are adding to our understanding of
the biology underlying disease development and progression. DNA methylation (DNAm) …

DNA methylation arrays as surrogate measures of cell mixture distribution

EA Houseman, WP Accomando, DC Koestler… - BMC …, 2012 - Springer
Background There has been a long-standing need in biomedical research for a method that
quantifies the normally mixed composition of leukocytes beyond what is possible by simple …

Reference-free cell mixture adjustments in analysis of DNA methylation data

EA Houseman, J Molitor, CJ Marsit - Bioinformatics, 2014 - academic.oup.com
Motivation: Recently there has been increasing interest in the effects of cell mixture on the
measurement of DNA methylation, specifically the extent to which small perturbations in cell …

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects

EA Houseman, ML Kile, DC Christiani, TA Ince… - BMC …, 2016 - Springer
Background Recent interest in reference-free deconvolution of DNA methylation data has
led to several supervised methods, but these methods do not easily permit the interpretation …

Human genetic adaptation to high altitude: evidence from the Andes

CG Julian, LG Moore - Genes, 2019 - mdpi.com
Whether Andean populations are genetically adapted to high altitudes has long been of
interest. Initial studies focused on physiological changes in the O2 transport system that …

Epigenetic mechanisms of epidermal differentiation

C Moltrasio, M Romagnuolo, AV Marzano - International journal of …, 2022 - mdpi.com
Keratinocyte differentiation is an essential process for epidermal stratification and stratum
corneum formation. Keratinocytes proliferate in the basal layer of the epidermis and start …

An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies

K McGregor, S Bernatsky, I Colmegna, M Hudson… - Genome biology, 2016 - Springer
Background Many different methods exist to adjust for variability in cell-type mixture
proportions when analyzing DNA methylation studies. Here we present the result of an …

Determination of DNA and RNA methylation in circulating tumor cells by mass spectrometry

W Huang, CB Qi, SW Lv, M Xie, YQ Feng… - Analytical …, 2016 - ACS Publications
DNA methylation (5-methylcytosine, 5-mC) is the best characterized epigenetic mark that
has regulatory roles in diverse biological processes. Recent investigation of RNA …

Epigenome-wide change and variation in DNA methylation in childhood: trajectories from birth to late adolescence

RH Mulder, A Neumann, CAM Cecil… - Human molecular …, 2021 - academic.oup.com
DNA methylation (DNAm) is known to play a pivotal role in childhood health and
development, but a comprehensive characterization of genome-wide DNAm trajectories …