Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom
HM Amemiya, J Schroeder, PL Freddolino - Transcription, 2021 - Taylor & Francis
Genome architecture has proven to be critical in determining gene regulation across almost
all domains of life. While many of the key components and mechanisms of eukaryotic …
all domains of life. While many of the key components and mechanisms of eukaryotic …
Polyphosphate drives bacterial heterochromatin formation
Heterochromatin is most often associated with eukaryotic organisms. Yet, bacteria also
contain areas with densely protein-occupied chromatin that appear to silence gene …
contain areas with densely protein-occupied chromatin that appear to silence gene …
Dynamic refolding of OxyS sRNA by the Hfq RNA chaperone
H Cai, J Roca, YF Zhao, SA Woodson - Journal of molecular biology, 2022 - Elsevier
Abstract The Sm protein Hfq chaperones small non-coding RNAs (sRNAs) in bacteria,
facilitating sRNA regulation of target mRNAs. Hfq acts in part by remodeling the sRNA and …
facilitating sRNA regulation of target mRNAs. Hfq acts in part by remodeling the sRNA and …
Dynamic interactions between the RNA chaperone Hfq, small regulatory RNAs, and mRNAs in live bacterial cells
S Park, K Prévost, EM Heideman, MC Carrier… - Elife, 2021 - elifesciences.org
RNA-binding proteins play myriad roles in regulating RNAs and RNA-mediated functions. In
bacteria, the RNA chaperone Hfq is an important post-transcriptional gene regulator. Using …
bacteria, the RNA chaperone Hfq is an important post-transcriptional gene regulator. Using …
Cryo soft X-ray tomography to explore Escherichia coli nucleoid remodeling by Hfq master regulator
The bacterial chromosomic DNA is packed within a membrane-less structure, the nucleoid,
due to the association of DNA with proteins called Nucleoid Associated Proteins (NAPs) …
due to the association of DNA with proteins called Nucleoid Associated Proteins (NAPs) …
Models of Hfq interactions with small non-coding RNA in Gram-negative and Gram-positive bacteria
D Watkins, D Arya - Frontiers in Cellular and Infection Microbiology, 2023 - frontiersin.org
Hfq is required by many Gram-negative bacteria to chaperone the interaction between small
non-coding RNA (sRNA) and mRNA to facilitate annealing. Conversely and despite the …
non-coding RNA (sRNA) and mRNA to facilitate annealing. Conversely and despite the …
Translational regulation by Hfq–Crc assemblies emerges from polymorphic ribonucleoprotein folding
T Dendooven, E Sonnleitner, U Bläsi, BF Luisi - The EMBO Journal, 2023 - embopress.org
The widely occurring bacterial RNA chaperone Hfq is a key factor in the post‐transcriptional
control of hundreds of genes in Pseudomonas aeruginosa. How this broadly acting protein …
control of hundreds of genes in Pseudomonas aeruginosa. How this broadly acting protein …
Unraveling membrane perturbations caused by the bacterial riboregulator Hfq
F Turbant, J Waeytens, C Campidelli… - International Journal of …, 2022 - mdpi.com
Hfq is a pleiotropic regulator that mediates several aspects of bacterial RNA metabolism.
The protein notably regulates translation efficiency and RNA decay in Gram-negative …
The protein notably regulates translation efficiency and RNA decay in Gram-negative …
Distinct heterochromatin‐like domains promote transcriptional memory and silence parasitic genetic elements in bacteria
HM Amemiya, TJ Goss, TM Nye, RL Hurto… - The EMBO …, 2022 - embopress.org
There is increasing evidence that prokaryotes maintain chromosome structure, which in turn
impacts gene expression. We recently characterized densely occupied, multi‐kilobase …
impacts gene expression. We recently characterized densely occupied, multi‐kilobase …
Hfq C-terminal region forms a β-rich amyloid-like motif without perturbing the N-terminal Sm-like structure
M Berbon, D Martinez, E Morvan, A Grélard… - Communications …, 2023 - nature.com
Hfq is a pleitropic actor that serves as stress response and virulence factor in the bacterial
cell. To execute its multiple functions, Hfq assembles into symmetric torus-shaped …
cell. To execute its multiple functions, Hfq assembles into symmetric torus-shaped …