[HTML][HTML] Biodiversity hotspots: A shortcut for a more complicated concept

C Marchese - Global Ecology and Conservation, 2015 - Elsevier
In an era of human activities, global environmental changes, habitat loss and species
extinction, conservation strategies are a crucial step toward minimizing biodiversity loss. For …

Embracing scale‐dependence to achieve a deeper understanding of biodiversity and its change across communities

JM Chase, BJ McGill, DJ McGlinn, F May… - Ecology …, 2018 - Wiley Online Library
Because biodiversity is multidimensional and scale‐dependent, it is challenging to estimate
its change. However, it is unclear (1) how much scale‐dependence matters for empirical …

iNEXT: an R package for rarefaction and extrapolation of species diversity (H ill numbers)

TC Hsieh, KH Ma, A Chao - Methods in ecology and evolution, 2016 - Wiley Online Library
Hill numbers (or the effective number of species) have been increasingly used to quantify
the species/taxonomic diversity of an assemblage. The sample‐size‐and coverage‐based …

[PDF][PDF] Species richness: estimation and comparison

A Chao, CH Chiu - Wiley StatsRef: statistics reference online, 2016 - researchgate.net
On the basis of the sampling data from an assemblage, estimation of species richness
(observed plus undetected) is statistically difficult especially for highly-diverse assemblages …

Soil microbial community and their functional genes during grassland restoration

J Liao, Y Dou, X Yang, S An - Journal of Environmental Management, 2023 - Elsevier
Soil microbial functional genes are linked with carbon (C) as well as nitrogen (N) cycling
processes, and their relative abundances are strongly affected by ecosystem managements …

PhyloMeasures: a package for computing phylogenetic biodiversity measures and their statistical moments

C Tsirogiannis, B Sandel - Ecography, 2016 - Wiley Online Library
We present PhyloMeasures, a new software package including both a C++ and R version,
that provides very fast computation of popular phylogenetic diversity measures …

Nonparametric estimation and comparison of species richness

A Chao, CH Chiu - Els, 2016 - Wiley Online Library
Species richness (the number of species) in an assemblage is a key metric in many
research fields of ecology. Simple counts of species in samples typically underestimate the …

An altered microbiome in urban coyotes mediates relationships between anthropogenic diet and poor health

S Sugden, D Sanderson, K Ford, LY Stein… - Scientific reports, 2020 - nature.com
Generalist species able to exploit anthropogenic food sources are becoming increasingly
common in urban environments. Coyotes (Canis latrans) are one such urban generalist that …

Phylogenetic homogenization of amphibian assemblages in human-altered habitats across the globe

AJ Nowakowski, LO Frishkoff… - Proceedings of the …, 2018 - National Acad Sciences
Habitat conversion is driving biodiversity loss and restructuring species assemblages across
the globe. Responses to habitat conversion vary widely, however, and little is known about …

Estimating and comparing microbial diversity in the presence of sequencing errors

CH Chiu, A Chao - PeerJ, 2016 - peerj.com
Estimating and comparing microbial diversity are statistically challenging due to limited
sampling and possible sequencing errors for low-frequency counts, producing spurious …