Molecular principles for heparin oligosaccharide–based inhibition of neutrophil elastase in cystic fibrosis

AB Kummarapurugu, DK Afosah… - Journal of Biological …, 2018 - ASBMB
Cystic fibrosis (CF) is a multifactorial disease in which dysfunction of protease–antiprotease
balance plays a key role. The current CF therapy relies on dornase α, hypertonic saline, and …

NMR and small-angle scattering-based structural analysis of protein complexes in solution

T Madl, F Gabel, M Sattler - Journal of structural biology, 2011 - Elsevier
Structural analysis of multi-domain protein complexes is a key challenge in current biology
and a prerequisite for understanding the molecular basis of essential cellular processes …

Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structure

D Yang, B Boyer, C Prévost, C Danilowicz… - Nucleic acids …, 2015 - academic.oup.com
RecA protein is the prototypical recombinase. Members of the recombinase family can
accurately repair double strand breaks in DNA. They also provide crucial links between …

Structural determinants of specific DNA-recognition by the THAP zinc finger

S Campagne, O Saurel, V Gervais… - Nucleic acids …, 2010 - academic.oup.com
Human THAP1 is the prototype of a large family of cellular factors sharing an original THAP
zinc-finger motif responsible for DNA binding. Human THAP1 regulates endothelial cell …

[HTML][HTML] In-Silico analysis reveals lower transcription efficiency of C241T variant of SARS-CoV-2 with host replication factors MADP1 and hnRNP-1

A Chaudhari, M Chaudhari, S Mahera, Z Saiyed… - Informatics in Medicine …, 2021 - Elsevier
Novel severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) has claimed more
than 3.3 million lives worldwide and still counting. As per the GISAID database, the …

Flexible protein docking refinement using pose‐dependent normal mode analysis

V Venkatraman, DW Ritchie - Proteins: Structure, Function, and …, 2012 - Wiley Online Library
Modeling conformational changes in protein docking calculations is challenging. To make
the calculations tractable, most current docking algorithms typically treat proteins as rigid …

Structural basis of simultaneous recruitment of the transcriptional regulators LMO2 and FOG1/ZFPM1 by the transcription factor GATA1

L Wilkinson-White, R Gamsjaeger… - Proceedings of the …, 2011 - National Acad Sciences
The control of red blood cell and megakaryocyte development by the regulatory protein
GATA1 is a paradigm for transcriptional regulation of gene expression in cell lineage …

Structural insight into the mechanisms of Wnt signaling antagonism by Dkk

L Chen, K Wang, Y Shao, J Huang, X Li, J Shan… - Journal of biological …, 2008 - ASBMB
Dickkopf (Dkk) proteins are antagonists of the canonical Wnt signaling pathway and are
crucial for embryonic cell fate and bone formation. Wnt antagonism of Dkk requires the …

Development of ssDNA aptamers as potent inhibitors of Mycobacterium tuberculosis acetohydroxyacid synthase

IA Baig, JY Moon, SC Lee, SW Ryoo… - Biochimica et Biophysica …, 2015 - Elsevier
Acetohydroxyacid synthase (AHAS) from Mycobacterium tuberculosis (Mtb) is a promising
potential drug target for an emerging class of new anti-tuberculosis agents. In this study, we …

Nuclear magnetic resonance analysis of protein–DNA interactions

S Campagne, V Gervais… - Journal of the Royal …, 2011 - royalsocietypublishing.org
Recent methodological and instrumental advances in solution-state nuclear magnetic
resonance have opened up the way to investigating challenging problems in structural …