CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells

R Rangan, R Feathers, S Khavnekar, A Lerer… - Nature …, 2024 - nature.com
Advances in cryo-electron tomography (cryo-ET) have produced new opportunities to
visualize the structures of dynamic macromolecules in native cellular environments. While …

Building up complexity in structural biology studies

E Nogales - Nature Structural & Molecular Biology, 2024 - nature.com
Macromolecules are involved in myriads of interactions that regulate their cellular function.
While years of structural biology progress was built by reducing this complexity, a molecular …

Unraveling the ultrastructure and dynamics of autophagic vesicles: Insights from advanced imaging techniques

T Jiang, C Ma, H Chen - FASEB BioAdvances, 2024 - Wiley Online Library
Autophagy, an intracellular self‐degradation process, is governed by a complex interplay of
signaling pathways and interactions between proteins and organelles. Its fundamental …

In-cell architecture of the mitochondrial respiratory chain

F Waltz, RD Righetto, X Zhang, R Kelley, M Obr… - bioRxiv, 2024 - biorxiv.org
Mitochondria produce energy through oxidative phosphorylation, carried out by five
membrane-bound complexes collectively known as the respiratory chain. These complexes …

Revealing biomolecular structure and motion with neural ab initio cryo-EM reconstruction

A Levy, M Grzadkowski, F Poitevin, F Vallese… - bioRxiv, 2024 - biorxiv.org
Proteins and other biomolecules form dynamic macromolecular machines that are tightly
orchestrated to move, bind, and perform chemistry. Cryo-electron microscopy (cryo-EM) can …

CLCC1 Governs Bilayer Equilibration at the Endoplasmic Reticulum to Maintain Cellular and Systemic Lipid Homeostasis

L Wu, J Wang, Y Wang, J Yang, Y Yao, D Huang, Y Hu… - bioRxiv, 2024 - biorxiv.org
The intricate orchestration of lipid production, storage, and mobilization is vital for cellular
and systemic homeostasis1, 2. Dysfunctional plasma lipid control represents the major risk …

biGMamAct: efficient CRISPR/Cas9-mediated docking of large functional DNA cargoes at the ACTB locus

M Pelosse, M Marcia - bioRxiv, 2024 - biorxiv.org
Recent advances in molecular and cell biology and imaging have unprecedentedly enabled
multi-scale structure-functional studies of entire metabolic pathways from atomic to …

Tools for Analysis of Large-scale Cryo-EM and Cryo-ET Data

R Raghu - 2024 - search.proquest.com
Cryo-electron microscopy (cryo-EM) is a powerful technique for visualizing the structure and
dynamics of macromolecules in near-physiological conditions. Owing to cryo-EM's ability to …

[PDF][PDF] Machine Learning Approaches for Automated Image Analysis in Cell Biology and Structural Biology

AS Bale, D Pandita, T Kaur, M Bahheti, A Maitra… - afjbs.com
When it comes to studying microscopic picture data in cell biology research, robotic
processing of information and machine learning approaches are crucial, as discussed in the …