Tools for analysis of the microbiome
J Galloway-Peña, B Hanson - Digestive diseases and sciences, 2020 - Springer
Over the past decade, it has become exceedingly clear that the microbiome is a critical factor
in human health and disease and thus should be investigated to develop innovative …
in human health and disease and thus should be investigated to develop innovative …
[HTML][HTML] The role of the gut microbiota in lipid and lipoprotein metabolism
Both environmental and genetic factors contribute to relative species abundance and
metabolic characteristics of the intestinal microbiota. The intestinal microbiota and …
metabolic characteristics of the intestinal microbiota. The intestinal microbiota and …
[HTML][HTML] The what, how and why of archaeological coprolite analysis
LM Shillito, JC Blong, EJ Green, EN van Asperen - Earth-Science Reviews, 2020 - Elsevier
Coprolites are a highly informative but still underutilized proxy for understanding past
environments, palaeodiets, and ancient human health. Here we provide a critical review of …
environments, palaeodiets, and ancient human health. Here we provide a critical review of …
Taxonomical and functional changes in COVID‐19 faecal microbiome could be related to SARS‐CoV‐2 faecal load
L Grenga, O Pible, G Miotello, K Culotta… - Environmental …, 2022 - Wiley Online Library
Since the beginning of the pandemic caused by the severe acute respiratory syndrome
coronavirus 2 (SARS‐CoV‐2) the gastrointestinal (GI) tract has emerged as an important …
coronavirus 2 (SARS‐CoV‐2) the gastrointestinal (GI) tract has emerged as an important …
[HTML][HTML] Modern metaproteomics: a unique tool to characterize the active microbiome in health and diseases, and pave the road towards new biomarkers—example of …
Thanks to the latest developments in mass spectrometry, software and standards,
metaproteomics is emerging as the vital complement of metagenomics, to make headway in …
metaproteomics is emerging as the vital complement of metagenomics, to make headway in …
[HTML][HTML] Computational prediction of secreted proteins in gram-negative bacteria
X Hui, Z Chen, J Zhang, M Lu, X Cai, Y Deng… - Computational and …, 2021 - Elsevier
Gram-negative bacteria harness multiple protein secretion systems and secrete a large
proportion of the proteome. Proteins can be exported to periplasmic space, integrated into …
proportion of the proteome. Proteins can be exported to periplasmic space, integrated into …
[HTML][HTML] Microbiota profiling in esophageal diseases: Novel insights into molecular staining and clinical outcomes
Gut microbiota is recognized nowadays as one of the key players in the development of
several gastro-intestinal diseases. The first studies focused mainly on healthy subjects with …
several gastro-intestinal diseases. The first studies focused mainly on healthy subjects with …
Gut microbiota in ALS: possible role in pathogenesis?
Introduction: The gut microbiota has important roles in maintaining human health. The
microbiota and its metabolic byproducts could play a role in the pathogenesis of …
microbiota and its metabolic byproducts could play a role in the pathogenesis of …
Human microbiota and personalized cancer treatments: role of commensal microbes in treatment outcomes for cancer patients
S Gately - Precision Medicine in Cancer Therapy, 2019 - Springer
The human gut microbiota consists of about 3.8× 10 13 microorganisms that play an
essential role in health, metabolism, and immunomodulation. These gut microbes alter …
essential role in health, metabolism, and immunomodulation. These gut microbes alter …
A sectioning and database enrichment approach for improved peptide spectrum matching in large, genome-guided protein sequence databases
Multiomics approaches focused on mass spectrometry (MS)-based data, such as
metaproteomics, utilize genomic and/or transcriptomic sequencing data to generate a …
metaproteomics, utilize genomic and/or transcriptomic sequencing data to generate a …