Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2
Despite tremendous efforts in the past two years, our understanding of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …
Recent advances in deep learning for protein-protein interaction analysis: A comprehensive review
M Lee - Molecules, 2023 - mdpi.com
Deep learning, a potent branch of artificial intelligence, is steadily leaving its transformative
imprint across multiple disciplines. Within computational biology, it is expediting progress in …
imprint across multiple disciplines. Within computational biology, it is expediting progress in …
Persistent Laplacian projected Omicron BA. 4 and BA. 5 to become new dominating variants
Due to its high transmissibility, Omicron BA. 1 ousted the Delta variant to become a
dominating variant in late 2021 and was replaced by more transmissible Omicron BA. 2 in …
dominating variant in late 2021 and was replaced by more transmissible Omicron BA. 2 in …
A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function
The recently reported machine learning-or deep learning-based scoring functions (SFs)
have shown exciting performance in predicting protein–ligand binding affinities with fruitful …
have shown exciting performance in predicting protein–ligand binding affinities with fruitful …
Emerging dominant SARS-CoV-2 variants
Accurate and reliable forecasting of emerging dominant severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) variants enables policymakers and vaccine makers to get …
coronavirus 2 (SARS-CoV-2) variants enables policymakers and vaccine makers to get …
Persistent Dirac for molecular representation
Molecular representations are of fundamental importance for the modeling and analysing
molecular systems. The successes in drug design and materials discovery have been …
molecular systems. The successes in drug design and materials discovery have been …
Persistent hyperdigraph homology and persistent hyperdigraph Laplacians
Hypergraphs are useful mathematical models for describing complex relationships among
members of a structured graph, while hyperdigraphs serve as a generalization that can …
members of a structured graph, while hyperdigraphs serve as a generalization that can …
Computational Approaches to Predict Protein–Protein Interactions in Crowded Cellular Environments
Investigating protein–protein interactions is crucial for understanding cellular biological
processes because proteins often function within molecular complexes rather than in …
processes because proteins often function within molecular complexes rather than in …
Machine learning methods for protein-protein binding affinity prediction in protein design
Z Guo, R Yamaguchi - Frontiers in Bioinformatics, 2022 - frontiersin.org
Protein-protein interactions govern a wide range of biological activity. A proper estimation of
the protein-protein binding affinity is vital to design proteins with high specificity and binding …
the protein-protein binding affinity is vital to design proteins with high specificity and binding …
Fingerprint-enhanced graph attention network (FinGAT) model for antibiotic discovery
Artificial Intelligence (AI) techniques are of great potential to fundamentally change antibiotic
discovery industries. Efficient and effective molecular featurization is key to all highly …
discovery industries. Efficient and effective molecular featurization is key to all highly …