Machine learning-assisted discovery of growth decision elements by relating bacterial population dynamics to environmental diversity
H Aida, T Hashizume, K Ashino, BW Ying - Elife, 2022 - elifesciences.org
Microorganisms growing in their habitat constitute a complex system. How the individual
constituents of the environment contribute to microbial growth remains largely unknown. The …
constituents of the environment contribute to microbial growth remains largely unknown. The …
Growth-optimized aminoacyl-tRNA synthetase levels prevent maximal tRNA charging
Aminoacyl-tRNA synthetases (aaRSs) serve a dual role in charging tRNAs. Their enzymatic
activities both provide protein synthesis flux and reduce uncharged tRNA levels. Although …
activities both provide protein synthesis flux and reduce uncharged tRNA levels. Although …
“Metabolic burden” explained: stress symptoms and its related responses induced by (over)expression of (heterologous) proteins in Escherichia coli
S Snoeck, C Guidi, M De Mey - Microbial Cell Factories, 2024 - Springer
Background Engineering bacterial strains to redirect the metabolism towards the production
of a specific product has enabled the development of industrial biotechnology. However …
of a specific product has enabled the development of industrial biotechnology. However …
Fundamental limits on the rate of bacterial growth and their influence on proteomic composition
Despite abundant measurements of bacterial growth rate, cell size, and protein content, we
lack a rigorous understanding of what sets the scale of these quantities and when protein …
lack a rigorous understanding of what sets the scale of these quantities and when protein …
(p) ppGpp: the magic governor of bacterial growth economy
M Zhu, Y Pan, X Dai - Current genetics, 2019 - Springer
A fundamental question in microbiology is how bacterial cells manage to coordinate gene
expression with cell growth during adapting to various environmental conditions. Although …
expression with cell growth during adapting to various environmental conditions. Although …
[HTML][HTML] Recent functional insights into the magic role of (p) ppGpp in growth control
H Mu, F Han, Q Wang, Y Wang, X Dai, M Zhu - … and structural biotechnology …, 2023 - Elsevier
Rapid growth and survival are two key traits that enable bacterial cells to thrive in their
natural habitat. The guanosine tetraphosphate and pentaphosphate [(p) ppGpp], also known …
natural habitat. The guanosine tetraphosphate and pentaphosphate [(p) ppGpp], also known …
Shaping of microbial phenotypes by trade-offs
M Zhu, X Dai - Nature Communications, 2024 - nature.com
Growth rate maximization is an important fitness strategy for microbes. However, the wide
distribution of slow-growing oligotrophic microbes in ecosystems suggests that rapid growth …
distribution of slow-growing oligotrophic microbes in ecosystems suggests that rapid growth …
Feedforward growth rate control mitigates gene activation burden
Heterologous gene activation causes non-physiological burden on cellular resources that
cells are unable to adjust to. Here, we introduce a feedforward controller that actuates …
cells are unable to adjust to. Here, we introduce a feedforward controller that actuates …
Global transcriptional regulators fine-tune the translational and metabolic efficiency for optimal growth of Escherichia coli
Global transcriptional regulators coordinate complex genetic interactions that bestow better
adaptability for an organism against external and internal perturbations. These …
adaptability for an organism against external and internal perturbations. These …
Integrated control of bacterial growth and stress response by (p) ppGpp in Escherichia coli: A seesaw fashion
M Zhu, H Mu, X Dai - Iscience, 2024 - cell.com
To thrive in nature, bacteria have to reproduce efficiently under favorable conditions and
persist during stress. The global strategy that integrates the growth control and stress …
persist during stress. The global strategy that integrates the growth control and stress …