Spatial transcriptomics: recent developments and insights in respiratory research

WJ Wang, LX Chu, LY He, MJ Zhang, KT Dang… - Military Medical …, 2023 - Springer
The respiratory system's complex cellular heterogeneity presents unique challenges to
researchers in this field. Although bulk RNA sequencing and single-cell RNA sequencing …

Spatial transcriptomics data and analytical methods: an updated perspective

S Khan, JJ Kim - Drug Discovery Today, 2024 - Elsevier
Spatial transcriptomics (ST) is a newly emerging field that integrates high-resolution imaging
and transcriptomic data to enable the high-throughput analysis of the spatial localization of …

Navigating the landscapes of spatial transcriptomics: How computational methods guide the way

R Li, X Chen, X Yang - Wiley Interdisciplinary Reviews: RNA, 2024 - Wiley Online Library
Spatially resolved transcriptomics has been dramatically transforming biological and
medical research in various fields. It enables transcriptome profiling at single‐cell, multi …

The role of microglia heterogeneity in synaptic plasticity and brain disorders: Will sequencing shed light on the discovery of new therapeutic targets?

Y You, Z Chen, WW Hu - Pharmacology & Therapeutics, 2024 - Elsevier
Microglia play a crucial role in interacting with neuronal synapses and modulating synaptic
plasticity. This function is particularly significant during postnatal development, as microglia …

A practical guide to spatial transcriptomics

L Valihrach, D Zucha, P Abaffy, M Kubista - Molecular Aspects of Medicine, 2024 - Elsevier
Spatial transcriptomics is revolutionizing modern biology, offering researchers an
unprecedented ability to unravel intricate gene expression patterns within tissues. From …

STAB2: an updated spatio-temporal cell atlas of the human and mouse brain

YT Yang, Z Gan, J Zhang, X Zhao, Y Yang… - Nucleic Acids …, 2024 - academic.oup.com
The brain is constituted of heterogeneous types of neuronal and non-neuronal cells, which
are organized into distinct anatomical regions, and show precise regulation of gene …

[HTML][HTML] Spatial Transcriptomics: A Powerful Tool in Disease Understanding and Drug Discovery

J Cao, C Li, Z Cui, S Deng, T Lei, W Liu, H Yang… - Theranostics, 2024 - ncbi.nlm.nih.gov
Recent advancements in modern science have provided robust tools for drug discovery. The
rapid development of transcriptome sequencing technologies has given rise to single-cell …

Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder

L Cao, C Yang, L Hu, W Jiang, Y Ren, T Xia, M Xu… - …, 2024 - academic.oup.com
Background Cell clustering is a pivotal aspect of spatial transcriptomics (ST) data analysis
as it forms the foundation for subsequent data mining. Recent advances in spatial domain …

SpatialSPM: statistical parametric mapping for the comparison of gene expression pattern images in multiple spatial transcriptomic datasets

J Ohn, MK Seo, J Park, D Lee, H Choi - Nucleic Acids Research, 2024 - academic.oup.com
Spatial transcriptomic (ST) techniques help us understand the gene expression levels in
specific parts of tissues and organs, providing insights into their biological functions. Even …

[HTML][HTML] New-generation technologies for spatial tissue analysis, indispensable tools for deciphering intratumor heterogeneity in the development of antibody-drug …

N Radosevic-Robin, M Kossai… - Translational Breast …, 2023 - ncbi.nlm.nih.gov
Technologies allowing in situ tissue molecular analysis of the “high-plex” type (> 20
molecules per tissue section) are the 21 st century inventions that are revolutionizing our …