HIV-1 drug resistance and resistance testing

DS Clutter, MR Jordan, S Bertagnolio… - Infection, Genetics and …, 2016 - Elsevier
The global scale-up of antiretroviral (ARV) therapy (ART) has led to dramatic reductions in
HIV-1 mortality and incidence. However, HIV drug resistance (HIVDR) poses a potential …

Diagnosis of human immunodeficiency virus infection

BS Parekh, CY Ou, PN Fonjungo… - Clinical microbiology …, 2018 - Am Soc Microbiol
SUMMARY HIV diagnostics have played a central role in the remarkable progress in
identifying, staging, initiating, and monitoring infected individuals on life-saving antiretroviral …

[HTML][HTML] Selective resistance profiles emerging in patient-derived clinical isolates with cabotegravir, bictegravir, dolutegravir, and elvitegravir

M Oliveira, RI Ibanescu, K Anstett, T Mésplède… - Retrovirology, 2018 - Springer
Background Integrase strand transfer inhibitors (INSTIs) are recommended for first-line HIV
therapy based on their relatively high genetic barrier to resistance. Although raltegravir …

[HTML][HTML] Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

ER Lee, N Parkin, C Jennings, CJ Brumme, E Enns… - Scientific Reports, 2020 - nature.com
Next generation sequencing (NGS) is a trending new standard for genotypic HIV-1 drug
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …

Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing

PL Tzou, P Ariyaratne, V Varghese, C Lee… - Journal of clinical …, 2018 - Am Soc Microbiol
The ability of next-generation sequencing (NGS) technologies to detect low frequency HIV-1
drug resistance mutations (DRMs) not detected by dideoxynucleotide Sanger sequencing …

[HTML][HTML] HIV-1 drug resistance mutations: potential applications for point-of-care genotypic resistance testing

SY Rhee, MR Jordan, E Raizes, A Chua, N Parkin… - PloS one, 2015 - journals.plos.org
The increasing prevalence of acquired and transmitted HIV-1 drug resistance is an obstacle
to successful antiretroviral therapy (ART) in the low-and middle-income countries (LMICs) …

Next-generation human immunodeficiency virus sequencing for patient management and drug resistance surveillance

M Noguera-Julian, D Edgil, PR Harrigan… - The Journal of …, 2017 - academic.oup.com
High-quality, simplified, and low-cost human immunodeficiency virus (HIV) drug resistance
tests that are able to provide timely actionable HIV resistance data at individual, population …

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1

S Balakrishna, T Loosli, M Zaheri… - Journal of …, 2023 - academic.oup.com
Background Next-generation sequencing (NGS) is gradually replacing Sanger sequencing
(SS) as the primary method for HIV genotypic resistance testing. However, there are limited …

Impact of next-generation sequencing defined human immunodeficiency virus pretreatment drug resistance on virological outcomes in the ANRS 12249 treatment-as …

A Derache, CC Iwuji, K Baisley… - Clinical Infectious …, 2019 - academic.oup.com
Background Previous studies in human immunodeficiency virus (HIV)-positive individuals on
thymidine analogue backbone antiretroviral therapy (ART) with either nevirapine or …

Low-frequency drug resistance in HIV-infected Ugandans on antiretroviral treatment is associated with regimen failure

F Kyeyune, RM Gibson, I Nankya… - Antimicrobial agents …, 2016 - Am Soc Microbiol
Most patients failing antiretroviral treatment in Uganda continue to fail their treatment
regimen even if a dominant drug-resistant HIV-1 genotype is not detected. In a recent …