Metabolomics and Microbial Metabolism: Toward a Systematic Understanding
D Holbrook-Smith, J Trouillon… - Annual Review of …, 2023 - annualreviews.org
Over the past decades, our understanding of microbial metabolism has increased
dramatically. Metabolomics, a family of techniques that are used to measure the quantities of …
dramatically. Metabolomics, a family of techniques that are used to measure the quantities of …
Cell factory design with advanced metabolic modelling empowered by artificial intelligence
Advances in synthetic biology and artificial intelligence (AI) have provided new opportunities
for modern biotechnology. High-performance cell factories, the backbone of industrial …
for modern biotechnology. High-performance cell factories, the backbone of industrial …
Metabolic engineering of Synechococcus elongatus 7942 for enhanced sucrose biosynthesis
The capability of cyanobacteria to produce sucrose from CO 2 and light has a remarkable
societal and biotechnological impact since sucrose can serve as a carbon and energy …
societal and biotechnological impact since sucrose can serve as a carbon and energy …
KETCHUP: Parameterizing of large-scale kinetic models using multiple datasets with different reference states
M Hu, PF Suthers, CD Maranas - Metabolic engineering, 2024 - Elsevier
Large-scale kinetic models provide the computational means to dynamically link metabolic
reaction fluxes to metabolite concentrations and enzyme levels while also conforming to …
reaction fluxes to metabolite concentrations and enzyme levels while also conforming to …
[HTML][HTML] Data integration across conditions improves turnover number estimates and metabolic predictions
P Wendering, M Arend, Z Razaghi-Moghadam… - Nature …, 2023 - nature.com
Turnover numbers characterize a key property of enzymes, and their usage in constraint-
based metabolic modeling is expected to increase the prediction accuracy of diverse cellular …
based metabolic modeling is expected to increase the prediction accuracy of diverse cellular …
Machine learning for the advancement of genome-scale metabolic modeling
Constraint-based modeling (CBM) has evolved as the core systems biology tool to map the
interrelations between genotype, phenotype, and external environment. The recent …
interrelations between genotype, phenotype, and external environment. The recent …
[HTML][HTML] Kinetic Study of Fig Syrup Fermentation by Genetically Modified Saccharomyces cerevisiae Yeast Strains: A Physicochemical Approach to the Yeast Strain …
K Kassoumi, D Sevastos, A Koliadima - Applied Sciences, 2024 - mdpi.com
Reversed-flow gas chromatography (RFGC) was employed to assess the impact of genetic
modification on Saccharomyces cerevisiae yeast strains during the process of alcoholic …
modification on Saccharomyces cerevisiae yeast strains during the process of alcoholic …
CatPred: A comprehensive framework for deep learning in vitro enzyme kinetic parameters kcat, Km and Ki
VS Boorla, CD Maranas - bioRxiv, 2024 - biorxiv.org
Quantification of enzymatic activities still heavily relies on experimental assays, which can
be expensive and time-consuming. Therefore, methods that enable accurate predictions of …
be expensive and time-consuming. Therefore, methods that enable accurate predictions of …
Yeast9: A Consensus Yeast Metabolic Model Enables Quantitative Analysis of Cellular Metabolism By Incorporating Big Data
Genome-scale metabolic models (GEMs) can facilitate metabolism-focused multi-omics
integrative analysis. Since Yeast8, the yeast-GEM of Saccharomyces cerevisiae, published …
integrative analysis. Since Yeast8, the yeast-GEM of Saccharomyces cerevisiae, published …
CatPred: A comprehensive framework for deep learning in vitro enzyme kinetic parameters kcat, Km and Ki
Quantification of enzymatic activities still heavily relies on experimental assays, which can
be expensive and time-consuming. Therefore, methods that enable accurate predictions of …
be expensive and time-consuming. Therefore, methods that enable accurate predictions of …