[HTML][HTML] Exploring and exploiting genetics and genomics for sweetpotato improvement: Status and perspectives

M Yan, H Nie, Y Wang, X Wang, R Jarret, J Zhao… - Plant …, 2022 - cell.com
Abstract Sweetpotato (Ipomoea batatas (L.) Lam.) is one of the most important root crops
cultivated worldwide. Because of its adaptability, high yield potential, and nutritional value …

Cell wall traits that influence plant development, immunity, and bioconversion

G De Lorenzo, S Ferrari, M Giovannoni… - The Plant …, 2019 - Wiley Online Library
The architecture of the plant cell wall is highly dynamic, being substantially re‐modeled
during growth and development. Cell walls determine the size and shape of cells and …

The genic view of hybridization in the Anthropocene

J Ottenburghs - Evolutionary Applications, 2021 - Wiley Online Library
Human impact is noticeable around the globe, indicating that a new era might have begun:
the Anthropocene. Continuing human activities, including land‐use changes, introduction of …

Genotyping polyploids from messy sequencing data

D Gerard, LFV Ferrão, AAF Garcia, M Stephens - Genetics, 2018 - academic.oup.com
Gerard et al. highlight several issues encountered when genotyping polyploid organisms
from next-generation sequencing data, including allelic bias, overdispersion, and outlying …

[HTML][HTML] Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species

LM Zingaretti, SA Gezan, LFV Ferrão… - Frontiers in plant …, 2020 - frontiersin.org
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates
are predicted using genome wide marker information. Although numerous examples of GP …

[HTML][HTML] Recommendations for choosing the genotyping method and best practices for quality control in crop genome-wide association studies

S Pavan, C Delvento, L Ricciardi, C Lotti, E Ciani… - Frontiers in …, 2020 - frontiersin.org
High-throughput genotyping boosts genome-wide association studies (GWAS) in crop
species, leading to the identification of single-nucleotide polymorphisms (SNPs) associated …

[HTML][HTML] A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.)

FZ Barreto, JRBF Rosa, TWA Balsalobre, MM Pastina… - PLoS …, 2019 - journals.plos.org
Sugarcane (Saccharum spp.) has a complex genome with variable ploidy and frequent
aneuploidy, which hampers the understanding of phenotype and genotype relations …

polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

LV Clark, AE Lipka, EJ Sacks - G3: Genes, Genomes, Genetics, 2019 - academic.oup.com
Low or uneven read depth is a common limitation of genotyping-by-sequencing (GBS) and
restriction site-associated DNA sequencing (RAD-seq), resulting in high missing data rates …

RosBREED: bridging the chasm between discovery and application to enable DNA-informed breeding in rosaceous crops

AF Iezzoni, J McFerson, J Luby, K Gasic… - Horticulture …, 2020 - academic.oup.com
The Rosaceae crop family (including almond, apple, apricot, blackberry, peach, pear, plum,
raspberry, rose, strawberry, sweet cherry, and sour cherry) provides vital contributions to …

[HTML][HTML] Meiosis in polyploids and implications for genetic mapping: a review

NR Soares, M Mollinari, GK Oliveira, GS Pereira… - Genes, 2021 - mdpi.com
Plant cytogenetic studies have provided essential knowledge on chromosome behavior
during meiosis, contributing to our understanding of this complex process. In this review, we …