Characteristics of transposable element exonization within human and mouse

N Sela, B Mersch, A Hotz-Wagenblatt, G Ast - PLoS One, 2010 - journals.plos.org
Insertion of transposed elements within mammalian genes is thought to be an important
contributor to mammalian evolution and speciation. Insertion of transposed elements into …

Genetic polymorphisms in transforming growth factor beta-1 (TGFB1) and childhood asthma and atopy

H Li, I Romieu, H Wu, JJ Sienra-Monge… - Human genetics, 2007 - Springer
Transforming growth factor beta-1 (TGFB1) may influence asthma by modulating allergic
airway inflammation and airway remodeling. The role of single nucleotide polymorphisms …

Genetic-variant hotspots and hotspot clusters in the human genome facilitating adaptation while increasing instability

X Long, H Xue - Human genomics, 2021 - Springer
Background Genetic variants, underlining phenotypic diversity, are known to distribute
unevenly in the human genome. A comprehensive understanding of the distributions of …

[HTML][HTML] Analysis of retrotransposon subfamily DNA methylation reveals novel early epigenetic changes in chronic lymphocytic leukemia

TM Barrow, NW Doo, RL Milne, GG Giles… - …, 2021 - ncbi.nlm.nih.gov
Retrotransposons such as LINE-1 and Alu comprise> 25% of the human genome. While
global hypomethylation of these elements has been widely reported in solid tumours, their …

The human genomic melting map

F Liu, E Tøstesen, JK Sundet, TK Jenssen… - PLoS computational …, 2007 - journals.plos.org
In a living cell, the antiparallel double-stranded helix of DNA is a dynamically changing
structure. The structure relates to interactions between and within the DNA strands, and the …

Altered DNA Methylation of the AluY Subfamily in Schizophrenia and Bipolar Disorder

S Li, L Zong, Y Hou, W Zhang, L Zhou, Q Yang… - …, 2019 - Taylor & Francis
Aim: To study DNA methylation patterns of Alu Y subfamilies in schizophrenia (SCZ) and
bipolar disorder (BPD). Patients & methods: A bisulfite conversion-specific one-label …

Genome-wide characterization of non-reference transposons in crops suggests non-random insertion

B Wei, H Liu, X Liu, Q Xiao, Y Wang, J Zhang, Y Hu… - BMC genomics, 2016 - Springer
Background Transposons (transposable elements or TEs) are DNA sequences that can
change their position within the genome. A large number of TEs have been identified in …

Massive interstitial copy-neutral loss-of-heterozygosity as evidence for cancer being a disease of the DNA-damage response

Y Kumar, J Yang, T Hu, L Chen, Z Xu, L Xu, XX Hu… - BMC medical …, 2015 - Springer
Background The presence of loss-of-heterozygosity (LOH) mutations in cancer cell genomes
is commonly encountered. Moreover, the occurrences of LOHs in tumor suppressor genes …

AluScan: a method for genome-wide scanning of sequence and structure variations in the human genome

L Mei, X Ding, SY Tsang, FW Pun, SK Ng, J Yang… - BMC genomics, 2011 - Springer
Background To complement next-generation sequencing technologies, there is a pressing
need for efficient pre-sequencing capture methods with reduced costs and DNA …

A Recombination Hotspot in a Schizophrenia-Associated Region of GABRB2

SK Ng, WS Lo, FW Pun, C Zhao, Z Yu, J Chen… - PloS one, 2010 - journals.plos.org
Background Schizophrenia is a major disorder with complex genetic mechanisms. Earlier,
population genetic studies revealed the occurrence of strong positive selection in the …