Next generation sequencing technologies: the doorway to the unexplored genomics of non-model plants

CIN Unamba, A Nag, RK Sharma - Frontiers in plant science, 2015 - frontiersin.org
Non-model plants ie, the species which have one or all of the characters such as long life
cycle, difficulty to grow in the laboratory or poor fecundity, have been schemed out of …

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools

F Dufresne, M Stift, R Vergilino, BK Mable - Molecular ecology, 2014 - Wiley Online Library
Despite the importance of polyploidy and the increasing availability of new genomic data,
there remain important gaps in our knowledge of polyploid population genetics. These gaps …

[HTML][HTML] Genotyping-by-sequencing in ecological and conservation genomics

SR Narum, CA Buerkle, JW Davey, MR Miller… - Molecular …, 2013 - ncbi.nlm.nih.gov
The fields of ecological and conservation genetics have developed greatly in recent
decades through the use of molecular markers to investigate organisms in their natural …

Sequencing and assembly of the 22-Gb loblolly pine genome

A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris… - Genetics, 2014 - academic.oup.com
Conifers are the predominant gymnosperm. The size and complexity of their genomes has
presented formidable technical challenges for whole-genome shotgun sequencing and …

Genotyping-by-sequencing (GBS) revealed molecular genetic diversity of Iranian wheat landraces and cultivars

H Alipour, MR Bihamta, V Mohammadi… - Frontiers in plant …, 2017 - frontiersin.org
Background: Genetic diversity is an essential resource for breeders to improve new cultivars
with desirable characteristics. Recently, genotyping-by-sequencing (GBS), a next …

A framework phylogeny of the American oak clade based on sequenced RAD data

AL Hipp, DAR Eaton, J Cavender-Bares, E Fitzek… - PloS one, 2014 - journals.plos.org
Previous phylogenetic studies in oaks (Quercus, Fagaceae) have failed to resolve the
backbone topology of the genus with strong support. Here, we utilize next-generation …

Species delimitation and relationships: the dance of the seven veils

Y Naciri, HP Linder - Taxon, 2015 - Wiley Online Library
An increasing number of studies using genetic data at the generic and species levels reveal
complex patterns of relationships among populations and species. Incomplete lineage …

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

[PDF][PDF] Betula pendula, Betula pubescens and other birches in Europe: distribution, habitat, usage and threats

P Beck, G Caudullo, D de Rigo, W Tinner - 2016 - boris.unibe.ch
Silver birch (Betula pendula Roth) and downy birch (Betula pubescens Ehrh.) are short-
lived, relatively small broadleaved trees that occur throughout most of Europe, particularly in …

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADS eq)

CF Graham, TC Glenn, AG McArthur… - Molecular ecology …, 2015 - Wiley Online Library
Degraded DNA from suboptimal field sampling is common in molecular ecology. However,
its impact on techniques that use restriction site associated next‐generation DNA …