A guide to antigen processing and presentation

N Pishesha, TJ Harmand, HL Ploegh - Nature Reviews Immunology, 2022 - nature.com
Antigen processing and presentation are the cornerstones of adaptive immunity. B cells
cannot generate high-affinity antibodies without T cell help. CD4+ T cells, which provide …

The genetics of human ageing

D Melzer, LC Pilling, L Ferrucci - Nature Reviews Genetics, 2020 - nature.com
The past two centuries have witnessed an unprecedented rise in human life expectancy.
Sustaining longer lives with reduced periods of disability will require an understanding of the …

Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies

D Reichart, EL Lindberg, H Maatz, AMA Miranda… - Science, 2022 - science.org
Pathogenic variants in genes that cause dilated cardiomyopathy (DCM) and arrhythmogenic
cardiomyopathy (ACM) convey high risks for the development of heart failure through …

The MHC locus and genetic susceptibility to autoimmune and infectious diseases

V Matzaraki, V Kumar, C Wijmenga, A Zhernakova - Genome biology, 2017 - Springer
In the past 50 years, variants in the major histocompatibility complex (MHC) locus, also
known as the human leukocyte antigen (HLA), have been reported as major risk factors for …

HLA variation and antigen presentation in COVID-19 and SARS-CoV-2 infection

DG Augusto, JA Hollenbach - Current opinion in immunology, 2022 - Elsevier
Highlights•Variation in both HLA and SARS-CoV-2 impact antigen presentation to T
cells.•HLA variation influences COVID-19 outcomes and T-cell responses to SARS-CoV …

The influence of HLA genotype on the severity of COVID‐19 infection

DJ Langton, SC Bourke, BA Lie, G Reiff, S Natu… - Hla, 2021 - Wiley Online Library
The impact of COVID‐19 varies markedly, not only between individual patients but also
between different populations. We hypothesised that differences in HLA genes might …

Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals

M Nagasaki, J Yasuda, F Katsuoka, N Nariai… - Nature …, 2015 - nature.com
Abstract The Tohoku Medical Megabank Organization reports the whole-genome
sequences of 1,070 healthy Japanese individuals and construction of a Japanese …

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

SME Sahraeian, M Mohiyuddin, R Sebra… - Nature …, 2017 - nature.com
Abstract RNA-sequencing (RNA-seq) is an essential technique for transcriptome studies,
hundreds of analysis tools have been developed since it was debuted. Although recent …

ODGI: understanding pangenome graphs

A Guarracino, S Heumos, S Nahnsen, P Prins… - …, 2022 - academic.oup.com
Motivation Pangenome graphs provide a complete representation of the mutual alignment of
collections of genomes. These models offer the opportunity to study the entire genomic …

Stem cell therapies for treating diabetes: progress and remaining challenges

JB Sneddon, Q Tang, P Stock, JA Bluestone, S Roy… - Cell stem cell, 2018 - cell.com
Restoration of insulin independence and normoglycemia has been the overarching goal in
diabetes research and therapy. While whole-organ and islet transplantation have become …