GWAS for genetics of complex quantitative traits: Genome to pangenome and SNPs to SVs and k‐mers

PK Gupta - BioEssays, 2021 - Wiley Online Library
The development of improved methods for genome‐wide association studies (GWAS) for
genetics of quantitative traits has been an active area of research during the last 25 years …

Identification of copy number variation in Tibetan sheep using whole genome resequencing reveals evidence of genomic selection

H Shi, T Li, M Su, H Wang, Q Li, X Lang, Y Ma - BMC genomics, 2023 - Springer
Background Copy number variation (CNV) is an important source of structural variation in
the mammalian genome. CNV assays present a new method to explore the genomic …

Detection of genome-wide copy number variation in Murrah buffaloes

H Kumar, M Panigrahi, M G. Strillacci… - Animal …, 2023 - Taylor & Francis
Abstract Riverine Buffaloes, especially the Murrah breed because of their adaptability to
harsh climatic conditions, is farmed in many countries to convert low-quality feed into …

Advancements in copy number variation screening in herbivorous livestock genomes and their association with phenotypic traits

X Liu, W Chen, B Huang, X Wang, Y Peng… - Frontiers in Veterinary …, 2024 - frontiersin.org
Copy number variations (CNVs) have garnered increasing attention within the realm of
genetics due to their prevalence in human, animal, and plant genomes. These structural …

A genome-wide scan of copy number variants in three Iranian indigenous river buffaloes

MG Strillacci, H Moradi-Shahrbabak, P Davoudi… - BMC genomics, 2021 - Springer
Abstract Background In Iran, river buffalo is of great importance. It plays an important role in
the economy of the Country, because its adaptation to harsh climate conditions and long …

Genome-wide analysis of CNVs in three populations of Tibetan sheep using whole-genome resequencing

L Hu, L Zhang, Q Li, H Liu, T Xu, N Zhao, X Han… - Frontiers in …, 2022 - frontiersin.org
Copy number variation (CNV), an important source of genomic structural variation, can
disturb genetic structure, dosage, regulation and expression, and is associated with …

[PDF][PDF] Structural variant landscapes reveal convergent signatures of evolution in sheep and goats

J Yang, DF Wang, JH Huang, QH Zhu, LY Luo, R Lu… - Genome Biology, 2024 - Springer
Background Sheep and goats have undergone domestication and improvement to produce
similar phenotypes, which have been greatly impacted by structural variants (SVs). Here, we …

Identification of selection signatures in Capra hircus and Capra aegagrus in Iran

S Taheri, N Saedi, S Zerehdaran… - Animal Science …, 2023 - Wiley Online Library
Identification of selection signatures may provide a better understanding of domestication
process and candidate genes contributing to this process. In this study, two populations of …

Estimating the copy number of the agouti signaling protein (ASIP) gene in goat breeds with different color patterns

D Guan, A Castelló, MG Luigi-Sierra, V Landi… - Livestock Science, 2021 - Elsevier
The agouti signaling protein (ASIP) gene has a crucial role in pigmentation by encoding a
protein that binds the melanocortin 1 receptor and stimulates the synthesis of pheomelanin …

Genome scan for variable genes involved in environmental adaptations of Nubian ibex

VJ Chebii, EA Mpolya, SO Oyola, A Kotze… - Journal of Molecular …, 2021 - Springer
Abstract The Nubian ibex (Capra nubiana) is a wild goat species that inhabits the Sahara
and Arabian deserts and is adapted to extreme ambient temperatures, intense solar …